Factsheet for Os12t0159600-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
golgi 1
extracellular 1
plastid 1
mitochondrion 1
endoplasmic reticulum 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

plastid: 27992503

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G125000.1	Wheat	cytosol, extracellular, plasma membrane	73.58	89.14
TraesCS5D01G133400.1	Wheat	golgi, plasma membrane, plastid	85.85	87.5
TraesCS5A01G125800.1	Wheat	golgi, plasma membrane, plastid	85.38	87.02
EES16682	Sorghum	golgi, plasma membrane, plastid	84.91	84.11
Os11t0157200-03	Rice	plasma membrane	82.08	82.86
Zm00001d041927_P001	Maize	endoplasmic reticulum, golgi, plasma membrane	82.55	82.55
TraesCS5D01G133300.1	Wheat	cytosol	78.77	80.29
TraesCS5B01G124900.1	Wheat	cytosol, endoplasmic reticulum, plasma membrane	77.83	79.33
TraesCS5A01G125600.1	Wheat	cytosol, peroxisome, plasma membrane	71.23	67.71
HORVU5Hr1G040160.3	Barley	golgi, peroxisome	85.85	66.67
GSMUA_Achr6P35580_001	Banana	cytosol, extracellular, plastid	28.3	62.5
GSMUA_Achr9P08960_001	Banana	plasma membrane	58.02	58.57
Os02t0538700-01	Rice	cytosol, endoplasmic reticulum, plasma membrane	54.72	51.79
PGSC0003DMT400050538	Potato	plasma membrane	49.53	50.24
Os04t0416700-01	Rice	golgi, plasma membrane	51.89	50.0
PGSC0003DMT400015090	Potato	plasma membrane	48.58	49.52
Solyc11g068890.1.1	Tomato	plasma membrane	48.58	49.28
Os04t0685400-01	Rice	golgi, plasma membrane, plastid	50.94	49.09
Solyc06g074040.1.1	Tomato	plasma membrane	48.11	49.04
VIT_06s0080g01200.t01	Wine grape	plasma membrane	46.23	47.12
Bra035001.1-P	Field mustard	plasma membrane	45.75	47.09
CDY08687	Canola	plasma membrane	45.75	47.09
CDY69513	Canola	plasma membrane	45.75	47.09
Os08t0102700-01	Rice	cytosol, peroxisome, plasma membrane	50.0	46.7
CDY29084	Canola	mitochondrion	37.26	45.93
VIT_08s0007g02350.t01	Wine grape	cytosol, endoplasmic reticulum, mitochondrion, plasma membrane	44.81	45.89
CDX90600	Canola	plasma membrane	44.34	45.19
AT3G44220.1	Thale cress	plasma membrane	43.87	45.15
Bra012801.1-P	Field mustard	plasma membrane	43.87	44.71
CDY69198	Canola	cytosol	43.87	44.71
CDY68967	Canola	cytosol	43.87	44.71
CDY72430	Canola	cytosol	43.4	44.23
Bra006927.1-P	Field mustard	cytosol	43.4	44.23
Bra002396.1-P	Field mustard	plasma membrane	42.92	43.96
AT5G06330.1	Thale cress	plasma membrane	42.92	43.96
AT2G35960.1	Thale cress	endoplasmic reticulum, golgi, plasma membrane	43.4	43.81
Bra033428.1-P	Field mustard	cytosol	42.92	43.75
AT3G11660.1	Thale cress	plasma membrane	42.45	43.06
CDX98590	Canola	plasma membrane	41.98	43.0
CDX92375	Canola	plasma membrane	41.98	43.0
KRH30370	Soybean	endoplasmic reticulum, mitochondrion, plasma membrane, plastid	43.4	42.99
CDY08506	Canola	endoplasmic reticulum, mitochondrion, plasma membrane, plastid	42.92	42.92
AT5G22200.1	Thale cress	cytosol, endoplasmic reticulum, plasma membrane	42.45	42.86
AT3G52470.1	Thale cress	extracellular, plasma membrane	41.98	42.79
CDY01043	Canola	mitochondrion	42.45	42.45
Bra034822.1-P	Field mustard	extracellular, mitochondrion, plasma membrane, plastid	42.45	42.45
KRG96252	Soybean	plasma membrane	41.98	42.38
KRH25304	Soybean	endoplasmic reticulum, mitochondrion, plasma membrane, plastid	42.45	42.25
CDY32068	Canola	plasma membrane	41.04	42.23
Solyc01g007220.2.1	Tomato	extracellular, plasma membrane	41.98	42.18
Bra038671.1-P	Field mustard	plasma membrane	41.98	42.18
PGSC0003DMT400042351	Potato	extracellular, plasma membrane	41.98	42.18
Bra017276.1-P	Field mustard	plasma membrane	41.04	41.83
CDY40419	Canola	plasma membrane	41.04	41.83
KRH72197	Soybean	plasma membrane	40.57	41.55
PGSC0003DMT400072342	Potato	extracellular, plasma membrane	41.04	41.23
KRH32836	Soybean	plasma membrane	40.57	41.15
KRH26671	Soybean	plasma membrane	42.45	40.72
CDY35671	Canola	plasma membrane	39.15	39.71
AT2G35970.1	Thale cress	cytosol, endoplasmic reticulum, plasma membrane	39.15	39.34
AT4G09590.1	Thale cress	cytosol, plasma membrane, vacuole	38.68	38.86
KRH22643	Soybean	plasma membrane	39.62	38.53
CDX81001	Canola	plastid	38.68	38.14
CDY09123	Canola	plasma membrane	37.26	37.8
CDY55755	Canola	plasma membrane	37.74	37.56
Bra005892.1-P	Field mustard	plasma membrane	37.26	37.09
Bra020177.1-P	Field mustard	plasma membrane	36.32	36.84
KRH67997	Soybean	plastid	42.45	35.71
AT5G05657.1	Thale cress	plastid	22.17	34.31
CDX95339	Canola	plasma membrane	41.98	29.87
Os09t0532200-00	Rice	plastid	30.19	29.36
Os02t0100600-01	Rice	endoplasmic reticulum, golgi, nucleus	29.25	28.97
Os05t0367900-01	Rice	plastid	31.6	25.77

Protein Annotations

MapMan:35.1	EntrezGene:4351561	ProteinID:ABA96522.1	EMBL:AK070481	EMBL:AK104185	ProteinID:BAF29230.1
ProteinID:BAT15979.1	ProteinID:EAZ19721.1	GO:GO:0003674	GO:GO:0004871	GO:GO:0005575	GO:GO:0005623
GO:GO:0005886	GO:GO:0006950	GO:GO:0006952	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150
GO:GO:0009506	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0046658	InterPro:LEA_2
EnsemblPlantsGene:Os12g0159600	EnsemblPlants:Os12t0159600-01	PFAM:PF03168	PANTHER:PTHR31415	PANTHER:PTHR31415:SF11	UniProt:Q2QXF1
TMHMM:TMhelix	UniParc:UPI00006819E3	RefSeq:XP_015618213.1	SEG:seg	:	:

Description

Harpin-induced 1 domain containing protein. (Os12t0159600-01);Harpin-induced 1 domain containing protein. (Os12t0159600-02)

Coordinates

chr12:-:2979796..2980850

Molecular Weight (calculated)

23144.7 Da

IEP (calculated)

8.200

GRAVY (calculated)

0.140

Length

212 amino acids

Sequence
(BLAST)

001: MGKDCGKHGD DDFRQGCRRF ITVLVVLAIL VGIIALIVYL VLRPTHPRFY LQDATLRQLD LSNSSSTAGG VLSTTIQVTV ASRNPNDRVG VYYDRLDVYA
101: SYKYQQITVA ASLPPVYQGH GDVDVWSPVL AGPSVPFAPY LADAISQDCQ AGYLILQVKI DGRVRWKVGS WISGHYHLFV TCPAFLVTAG GNGSPGASGF
201: RFQTTTYCHV EV

Best Arabidopsis Sequence Match ( AT3G44220.1 )
(BLAST)

001: MTEKECEHHH DEDEKMRKRI GALVLGFLAA VLFVVFLVWA ILHPHGPRFV LQDATIYAFN VSQPNYLTSN LQVTLSSRNP NDKIGIFYDR LDIYASYRNQ
101: QVTLATLLPA TYQGHLDVTI WSPFLYGTTV PVAPYFSPAL SQDLTAGMVL LNIKIDGWVR WKVGTWVSGR YRLHVNCPAY ITLAGHFSGD GPAVKYQLVQ
201: RCAVDV

Arabidopsis Description

At3g44220 [Source:UniProtKB/TrEMBL;Acc:Q9LXM6]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.