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Sorghum
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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: golgi, plasma membrane, plastid

Predictor Summary:
  • nucleus 1
  • golgi 2
  • plastid 2
  • extracellular 1
  • plasma membrane 2
  • endoplasmic reticulum 1
  • vacuole 1
Predictors GFP MS/MS Papers
Winner Takes All:golgi, plasma membrane, plastid
Any Predictor:nucleus, plastid, secretory
BaCelLo:nucleus
MultiLoc:golgi
Plant-mPloc:plastid
PProwler:secretory
WoLF PSORT:plastid
YLoc:plasma membrane
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d052776_P001 Maize extracellular 87.38 87.79
Os11t0157200-03 Rice plasma membrane 77.1 78.57
HORVU4Hr1G021190.1 Barley golgi, plasma membrane, plastid 76.64 77.0
TraesCS4B01G115700.1 Wheat peroxisome, plasma membrane, plastid 75.7 76.06
TraesCS4A01G199700.1 Wheat golgi, plasma membrane, plastid 75.7 76.06
EES16682 Sorghum golgi, plasma membrane, plastid 75.7 75.7
TraesCS4D01G113300.1 Wheat peroxisome, plasma membrane, plastid 75.23 75.59
GSMUA_Achr6P35580_001 Banana cytosol, extracellular, plastid 25.7 57.29
GSMUA_Achr9P08960_001 Banana plasma membrane 52.8 53.81
EES06921 Sorghum endoplasmic reticulum 48.6 49.06
CDY29084 Canola mitochondrion 38.32 47.67
PGSC0003DMT400015090 Potato plasma membrane 46.26 47.6
PGSC0003DMT400050538 Potato plasma membrane 46.26 47.37
Solyc06g074040.1.1 Tomato plasma membrane 45.79 47.12
EES12138 Sorghum extracellular, golgi, plasma membrane 48.6 47.06
Solyc11g068890.1.1 Tomato plasma membrane 44.86 45.93
EES13132 Sorghum cytosol 46.26 45.21
VIT_06s0080g01200.t01 Wine grape plasma membrane 43.93 45.19
KRH30370 Soybean endoplasmic reticulum, mitochondrion, plasma membrane, plastid 44.86 44.86
Bra002396.1-P Field mustard plasma membrane 42.99 44.44
CDY69513 Canola plasma membrane 42.52 44.17
CDY08687 Canola plasma membrane 42.52 44.17
Bra035001.1-P Field mustard plasma membrane 42.52 44.17
KRH25304 Soybean endoplasmic reticulum, mitochondrion, plasma membrane, plastid 43.46 43.66
CDX90600 Canola plasma membrane 42.06 43.27
AT3G44220.1 Thale cress plasma membrane 41.59 43.2
CDX92375 Canola plasma membrane 41.59 43.0
VIT_08s0007g02350.t01 Wine grape cytosol, endoplasmic reticulum, mitochondrion, plasma membrane 41.59 43.0
Bra012801.1-P Field mustard plasma membrane 41.59 42.79
Bra006927.1-P Field mustard cytosol 41.59 42.79
CDY69198 Canola cytosol 41.59 42.79
EES14353 Sorghum cytosol, mitochondrion, peroxisome, plasma membrane 42.52 42.52
CDX98590 Canola plasma membrane 41.12 42.51
CDY68967 Canola cytosol 41.12 42.31
AT3G11660.1 Thale cress plasma membrane 41.12 42.11
CDY72430 Canola cytosol 40.65 41.83
AT5G06330.1 Thale cress plasma membrane 40.19 41.55
AT3G52470.1 Thale cress extracellular, plasma membrane 40.19 41.35
Bra033428.1-P Field mustard cytosol 40.19 41.35
CDY08506 Canola endoplasmic reticulum, mitochondrion, plasma membrane, plastid 40.65 41.04
KRH26671 Soybean plasma membrane 42.06 40.72
Bra034822.1-P Field mustard extracellular, mitochondrion, plasma membrane, plastid 40.19 40.57
CDY01043 Canola mitochondrion 40.19 40.57
Solyc01g007220.2.1 Tomato extracellular, plasma membrane 39.72 40.28
Bra038671.1-P Field mustard plasma membrane 39.72 40.28
AT2G35960.1 Thale cress endoplasmic reticulum, golgi, plasma membrane 39.25 40.0
AT5G22200.1 Thale cress cytosol, endoplasmic reticulum, plasma membrane 39.25 40.0
KRH22643 Soybean plasma membrane 40.65 39.91
KRH32836 Soybean plasma membrane 38.78 39.71
KRH72197 Soybean plasma membrane 38.32 39.61
PGSC0003DMT400042351 Potato extracellular, plasma membrane 38.78 39.34
CDY32068 Canola plasma membrane 37.85 39.32
KRG96252 Soybean plasma membrane 38.32 39.05
PGSC0003DMT400072342 Potato extracellular, plasma membrane 38.32 38.86
Bra017276.1-P Field mustard plasma membrane 37.38 38.46
CDY40419 Canola plasma membrane 37.38 38.46
CDY35671 Canola plasma membrane 37.38 38.28
CDY09123 Canola plasma membrane 36.92 37.8
AT2G35970.1 Thale cress cytosol, endoplasmic reticulum, plasma membrane 36.92 37.44
AT4G09590.1 Thale cress cytosol, plasma membrane, vacuole 36.45 36.97
Bra020177.1-P Field mustard plasma membrane 35.98 36.84
CDY55755 Canola plasma membrane 35.51 35.68
Bra005892.1-P Field mustard plasma membrane 35.05 35.21
CDX81001 Canola plastid 34.58 34.42
KRH67997 Soybean plastid 40.19 34.13
AT5G05657.1 Thale cress plastid 21.5 33.58
CDX95339 Canola plasma membrane 39.25 28.19
OQU84133 Sorghum endoplasmic reticulum, golgi, nucleus 27.1 25.0
EER99240 Sorghum golgi 24.3 23.74
OQU77870 Sorghum plastid 28.97 19.44
Protein Annotations
MapMan:35.1EntrezGene:8058577UniProt:C5Y538EnsemblPlants:EES08013ProteinID:EES08013ProteinID:EES08013.1
GO:GO:0003674GO:GO:0004871GO:GO:0005575GO:GO:0005623GO:GO:0005886GO:GO:0006950
GO:GO:0006952GO:GO:0007154GO:GO:0007165GO:GO:0008150GO:GO:0009506GO:GO:0009987
GO:GO:0016020GO:GO:0016021GO:GO:0046658InterPro:LEA_2PFAM:PF03168PANTHER:PTHR31415
PANTHER:PTHR31415:SF11EnsemblPlantsGene:SORBI_3005G044000unigene:Sbi.5248TMHMM:TMhelixUniParc:UPI0001A86273RefSeq:XP_002449025.1
SEG:seg:::::
Description
hypothetical protein
Coordinates
chr5:+:4167203..4169195
Molecular Weight (calculated)
23458.3 Da
IEP (calculated)
9.290
GRAVY (calculated)
0.106
Length
214 amino acids
Sequence
(BLAST)
001: MGKDCGNHAD DDFRQSCRRL LLILLTLALL TGVIALIIYL VLRPTHPRFY LQDASLRQLD LTNGTAPLLS TTAQVTLASR NPNGRVGVYY DRLDVSASYK
101: YQQITLASRL PQVYQGHGDV DVWSPVLSGP GVPFAPFLAD ALSKDIAAGY LILQVRIDGR VRWKVGSWVS GHYHIFVTCP AYFINAGAGS GYRGGTVGAH
201: GLRFQTATYC RVEV
Best Arabidopsis Sequence Match ( AT3G11660.1 )
(BLAST)
001: MKDCENHGHS RRKLIRRIFW SIIFVLFIIF LTILLIWAIL QPSKPRFILQ DATVYAFNVS GNPPNLLTSN FQITLSSRNP NNKIGIYYDR LDVYATYRSQ
101: QITFPTSIPP TYQGHKDVDI WSPFVYGTSV PIAPFNGVSL DTDKDNGVVL LIIRADGRVR WKVGTFITGK YHLHVKCPAY INFGNKANGV IVGDNAVKYT
201: FTTSCSVSV
Arabidopsis Description
NHL1NDR1/HIN1-like protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SRN0]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.