Factsheet for TraesCS2B01G603000.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, golgi, cytosol

Predictor Summary:

golgi 1
mitochondrion 1
cytosol 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, golgi, plasma membrane
Any Predictor:	cytosol, golgi, plasma membrane
MultiLoc:	golgi
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G596200.1	Wheat	cytosol, golgi, plasma membrane	97.74	97.74
TraesCS2A01G583600.1	Wheat	cytosol, golgi, plasma membrane	96.38	96.38
HORVU2Hr1G123370.1	Barley	cytosol, golgi, plasma membrane	95.02	95.45
EES13132	Sorghum	cytosol	83.71	84.47
Zm00001d026664_P001	Maize	extracellular	81.9	81.9
Os04t0685400-01	Rice	golgi, plasma membrane, plastid	77.83	78.18
TraesCS7B01G227800.1	Wheat	cytosol, endoplasmic reticulum, mitochondrion, plasma membrane	62.44	63.89
GSMUA_Achr9P29670_001	Banana	cytosol, extracellular, mitochondrion, plasma membrane	43.44	54.55
TraesCS5B01G125000.1	Wheat	cytosol, extracellular, plasma membrane	42.08	53.14
GSMUA_Achr8P34450_001	Banana	plasma membrane	50.23	53.11
GSMUA_Achr10P...	Banana	plasma membrane	50.23	52.61
TraesCS4B01G115700.1	Wheat	peroxisome, plasma membrane, plastid	49.77	51.64
GSMUA_Achr6P19500_001	Banana	endoplasmic reticulum, plasma membrane	47.51	49.76
GSMUA_Achr11P...	Banana	cytosol, extracellular, mitochondrion, peroxisome	40.27	49.72
PGSC0003DMT400015090	Potato	plasma membrane	46.15	49.04
VIT_06s0080g01200.t01	Wine grape	plasma membrane	46.15	49.04
Solyc06g074040.1.1	Tomato	plasma membrane	45.7	48.56
TraesCS5B01G124900.1	Wheat	cytosol, endoplasmic reticulum, plasma membrane	45.25	48.08
GSMUA_Achr7P03290_001	Banana	endoplasmic reticulum, mitochondrion, plasma membrane, plastid	45.7	47.42
KRH26671	Soybean	plasma membrane	46.61	46.61
CDY69513	Canola	plasma membrane	42.99	46.12
CDY08687	Canola	plasma membrane	42.99	46.12
Bra035001.1-P	Field mustard	plasma membrane	42.99	46.12
Solyc11g068890.1.1	Tomato	plasma membrane	43.44	45.93
PGSC0003DMT400050538	Potato	plasma membrane	43.44	45.93
AT3G44220.1	Thale cress	plasma membrane	42.53	45.63
KRH30370	Soybean	endoplasmic reticulum, mitochondrion, plasma membrane, plastid	43.89	45.33
TraesCS5B01G498200.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	43.44	44.86
KRH25304	Soybean	endoplasmic reticulum, mitochondrion, plasma membrane, plastid	42.53	44.13
TraesCS2B01G313900.1	Wheat	extracellular, plasma membrane	42.53	43.52
TraesCS2B01G232700.1	Wheat	endoplasmic reticulum, golgi, plasma membrane	42.08	43.26
Bra002396.1-P	Field mustard	plasma membrane	39.82	42.51
VIT_08s0007g02350.t01	Wine grape	cytosol, endoplasmic reticulum, mitochondrion, plasma membrane	39.82	42.51
AT5G22200.1	Thale cress	cytosol, endoplasmic reticulum, plasma membrane	40.27	42.38
KRH22643	Soybean	plasma membrane	41.63	42.2
AT5G06330.1	Thale cress	plasma membrane	39.37	42.03
PGSC0003DMT400042351	Potato	extracellular, plasma membrane	39.82	41.71
CDX92375	Canola	plasma membrane	38.91	41.55
Solyc01g007220.2.1	Tomato	extracellular, plasma membrane	39.37	41.23
AT3G11660.1	Thale cress	plasma membrane	38.91	41.15
CDX98590	Canola	plasma membrane	38.46	41.06
PGSC0003DMT400072342	Potato	extracellular, plasma membrane	38.91	40.76
Bra038671.1-P	Field mustard	plasma membrane	38.91	40.76
CDY29084	Canola	mitochondrion	31.67	40.7
KRH32836	Soybean	plasma membrane	38.46	40.67
KRH72197	Soybean	plasma membrane	38.01	40.58
Bra012801.1-P	Field mustard	plasma membrane	38.01	40.38
CDY72430	Canola	cytosol	38.01	40.38
CDX90600	Canola	plasma membrane	38.01	40.38
CDY01043	Canola	mitochondrion	38.46	40.09
Bra034822.1-P	Field mustard	extracellular, mitochondrion, plasma membrane, plastid	38.46	40.09
CDY08506	Canola	endoplasmic reticulum, mitochondrion, plasma membrane, plastid	38.46	40.09
KRG96252	Soybean	plasma membrane	38.01	40.0
AT3G52470.1	Thale cress	extracellular, plasma membrane	37.56	39.9
Bra033428.1-P	Field mustard	cytosol	37.56	39.9
AT2G35960.1	Thale cress	endoplasmic reticulum, golgi, plasma membrane	37.56	39.52
CDY68967	Canola	cytosol	37.1	39.42
CDY69198	Canola	cytosol	37.1	39.42
Bra006927.1-P	Field mustard	cytosol	37.1	39.42
CDY32068	Canola	plasma membrane	36.65	39.32
CDY35671	Canola	plasma membrane	37.1	39.23
CDY40419	Canola	plasma membrane	35.75	37.98
Bra017276.1-P	Field mustard	plasma membrane	35.75	37.98
CDY09123	Canola	plasma membrane	35.75	37.8
AT2G35970.1	Thale cress	cytosol, endoplasmic reticulum, plasma membrane	35.75	37.44
Bra020177.1-P	Field mustard	plasma membrane	35.29	37.32
AT4G09590.1	Thale cress	cytosol, plasma membrane, vacuole	35.29	36.97
CDY55755	Canola	plasma membrane	34.39	35.68
Bra005892.1-P	Field mustard	plasma membrane	33.94	35.21
KRH67997	Soybean	plastid	39.82	34.92
CDX81001	Canola	plastid	33.48	34.42
AT5G05657.1	Thale cress	plastid	21.27	34.31
TraesCS5B01G320400.1	Wheat	cytosol, plasma membrane, vacuole	28.51	28.0
TraesCS6B01G383000.1	Wheat	endoplasmic reticulum	25.79	27.94
CDX95339	Canola	plasma membrane	37.1	27.52
TraesCS1B01G245500.1	Wheat	cytosol	30.77	26.88
TraesCS5B01G103800.1	Wheat	cytosol	23.98	25.24

Protein Annotations

EnsemblPlants:TraesCS2B01G603000.1	EnsemblPlantsGene:TraesCS2B01G603000	InterPro:LEA_2	PANTHER:PTHR31415	PANTHER:PTHR31415:SF8	PFAM:PF03168
SEG:seg	TMHMM:TMhelix	MapMan:35.1	:	:	:

Description

No Description!

Coordinates

chr2B:+:785208509..785209174

Molecular Weight (calculated)

24343.7 Da

IEP (calculated)

8.853

GRAVY (calculated)

0.147

Length

221 amino acids

Sequence
(BLAST)

001: MAVKDCGGHK GGGCECHRRR LYRKCCGALL ALLLLALFVI LIVYLVLRPH KPRFYLQDLA VLCLNVTPPT SAYLFTTMQA TVAARNPNDR VGVYYDEADM
101: YAQYKGVAIT VPTRLPVAYQ GHRDQSVWSP YLRSMDSVVL PPVLAVALAQ DETAGYVLVD VKVDGFVRWK VGTWISGHYH LRVNCPALIR VNEGKGSYGA
201: TTGGGPDYFR FQQAAACAVD V

Best Arabidopsis Sequence Match ( AT3G11660.1 )
(BLAST)

001: MKDCENHGHS RRKLIRRIFW SIIFVLFIIF LTILLIWAIL QPSKPRFILQ DATVYAFNVS GNPPNLLTSN FQITLSSRNP NNKIGIYYDR LDVYATYRSQ
101: QITFPTSIPP TYQGHKDVDI WSPFVYGTSV PIAPFNGVSL DTDKDNGVVL LIIRADGRVR WKVGTFITGK YHLHVKCPAY INFGNKANGV IVGDNAVKYT
201: FTTSCSVSV

Arabidopsis Description

NHL1NDR1/HIN1-like protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SRN0]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.