Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX84933 | Canola | cytosol | 69.5 | 70.56 |
| CDY27605 | Canola | cytosol | 70.5 | 70.15 |
| Bra032817.1-P | Field mustard | nucleus | 68.5 | 68.16 |
| CDY03907 | Canola | cytosol | 66.0 | 68.04 |
| CDY15722 | Canola | cytosol | 67.0 | 67.68 |
| Bra030034.1-P | Field mustard | cytosol | 66.5 | 67.17 |
| VIT_01s0010g03800.t01 | Wine grape | cytosol | 34.5 | 35.2 |
| KRG97393 | Soybean | nucleus | 30.0 | 31.91 |
| KRH31520 | Soybean | cytosol | 24.0 | 31.58 |
| Solyc05g015640.2.1 | Tomato | cytosol | 31.5 | 31.19 |
| PGSC0003DMT400084737 | Potato | cytosol | 32.0 | 30.92 |
| HORVU2Hr1G084420.1 | Barley | cytosol | 26.0 | 27.08 |
| KRH76090 | Soybean | nucleus | 15.0 | 26.09 |
| TraesCS2D01G345400.1 | Wheat | cytosol | 25.5 | 26.02 |
| TraesCS2A01G346700.1 | Wheat | cytosol | 25.0 | 25.77 |
| TraesCS2B01G365000.1 | Wheat | cytosol | 24.5 | 25.52 |
| Zm00001d016570_P001 | Maize | cytosol | 26.5 | 24.65 |
| Zm00001d050563_P001 | Maize | nucleus | 24.5 | 24.26 |
| EES05123 | Sorghum | nucleus | 26.0 | 24.19 |
| Os02t0509600-01 | Rice | plasma membrane | 24.0 | 22.75 |
Protein Annotations
| MapMan:35.2 | EntrezGene:839619 | UniProt:A0A178W3R8 | ProteinID:AAF99729.1 | ProteinID:AEE30804.1 | ArrayExpress:AT1G27300 |
| EnsemblPlantsGene:AT1G27300 | RefSeq:AT1G27300 | TAIR:AT1G27300 | RefSeq:AT1G27300-TAIR-G | EnsemblPlants:AT1G27300.1 | TAIR:AT1G27300.1 |
| EMBL:AY054537 | EMBL:AY064655 | Unigene:At.66864 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005768 |
| GO:GO:0005794 | GO:GO:0005802 | GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016021 | RefSeq:NP_564275.1 |
| ProteinID:OAP12704.1 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PANTHER:PTHR35280 | UniProt:Q9FZK5 | TMHMM:TMhelix |
| UniParc:UPI00000AA84C | SEG:seg | : | : | : | : |
Description
F17L21.9 [Source:UniProtKB/TrEMBL;Acc:Q9FZK5]
Coordinates
chr1:+:9483157..9484368
Molecular Weight (calculated)
22421.3 Da
IEP (calculated)
4.689
GRAVY (calculated)
-0.784
Length
200 amino acids
Sequence
(BLAST)
(BLAST)
001: MESSEDVENL SRAIEKLLHE KRKREASGDA FIEDADDQLF LSSLISQLES PNPKGKEDVI TGEEEEKEEE SADSSPSKGK SEGQRQLEES IEEIAKDIKK
101: VKKQNKITHV LLSATIILTL VWQLSEYSMI FMLKDRISHP VRSIGGMLNG MFKGKLRPIK NQLAGTSNSN DQNNHGNGSH TGPQLQVPEL LREFGFDDEE
101: VKKQNKITHV LLSATIILTL VWQLSEYSMI FMLKDRISHP VRSIGGMLNG MFKGKLRPIK NQLAGTSNSN DQNNHGNGSH TGPQLQVPEL LREFGFDDEE
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.