CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, golgi, vacuole

Predictor Summary:

extracellular 5
endoplasmic reticulum 6
vacuole 6
plasma membrane 6
golgi 6

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, plasma membrane, vacuole
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	golgi
Plant-mPloc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
EER96942
EES12559
EES14314
EES14570
KXG31128
OQU81760

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G40042.1	EES12559	AT3G60600.1	21798944
AT4G40042.1	EES14570	AT3G60600.1	21798944
AT4G40042.1	KXG31128	AT3G60600.1	21798944
AT4G40042.1	EER96942	AT4G26455.1	21798944
AT4G40042.1	EES14314	AT4G26455.1	21798944
AT4G40042.1	OQU81760	AT4G26455.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d013642_P001	Maize	golgi, plasma membrane, vacuole	92.78	93.75
Zm00001d033479_P001	Maize	extracellular	80.41	90.7
HORVU3Hr1G087090.2	Barley	endoplasmic reticulum	74.23	82.76
TraesCS3B01G387600.1	Wheat	golgi	82.47	82.47
TraesCS3A01G354600.1	Wheat	golgi, plasma membrane, vacuole	82.47	82.47
TraesCS3D01G348600.1	Wheat	golgi, plasma membrane, vacuole	81.44	81.44
CDX69361	Canola	golgi, plasma membrane	61.86	65.93
CDX76926	Canola	golgi, plasma membrane	59.79	65.17
Bra011812.1-P	Field mustard	golgi, plasma membrane	60.82	64.84
CDX75701	Canola	golgi, plasma membrane	60.82	64.84
Bra038525.1-P	Field mustard	endoplasmic reticulum, golgi	58.76	64.04
CDY13762	Canola	endoplasmic reticulum, golgi	58.76	64.04
AT4G40042.1	Thale cress	golgi, plasma membrane, vacuole	60.82	63.44
KRH31466	Soybean	golgi, plasma membrane	60.82	63.44
AT2G22425.1	Thale cress	endoplasmic reticulum, extracellular, golgi	59.79	63.04
KRH42659	Soybean	golgi, plasma membrane	59.79	62.37
KRH58761	Soybean	plasma membrane	59.79	62.37
KRG97437	Soybean	golgi, plasma membrane	59.79	62.37
GSMUA_Achr3P16130_001	Banana	endoplasmic reticulum, golgi, plasma membrane	58.76	59.38
Os12t0438900-01	Rice	endoplasmic reticulum, plasma membrane, plastid	83.51	57.86
Solyc03g005740.1.1	Tomato	extracellular, golgi, plasma membrane	47.42	57.5
VIT_01s0010g03360.t01	Wine grape	golgi, nucleus, plasma membrane	61.86	57.14
KRH00092	Soybean	extracellular, plasma membrane, vacuole	36.08	44.87
GSMUA_Achr1P13530_001	Banana	mitochondrion	57.73	40.29
GSMUA_Achr8P28280_001	Banana	golgi, mitochondrion, plasma membrane, plastid	64.95	39.38

Protein Annotations

MapMan:18.10.1.1.2	EntrezGene:8056769	UniProt:C5WQG8	EnsemblPlants:EER91131	ProteinID:EER91131	ProteinID:EER91131.1
GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005783	GO:GO:0005787	GO:GO:0006465	GO:GO:0006810	GO:GO:0008150	GO:GO:0008152
GO:GO:0008233	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	GO:GO:0019538
GO:GO:0030176	GO:GO:0045047	PFAM:PF06645	PANTHER:PTHR13202	EnsemblPlantsGene:SORBI_3001G148700	InterPro:SPC12
unigene:Sbi.15790	TMHMM:TMhelix	UniParc:UPI0001A8202D	RefSeq:XP_002464133.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr1:+:11968335..11970423

Molecular Weight (calculated)

10545.0 Da

IEP (calculated)

10.747

GRAVY (calculated)

0.149

Length

97 amino acids

Sequence
(BLAST)

1: MDWLGQKRAE MLMQVLLVAS AVVAFVVGYV RADFQLMLLV YAGGVVLTAF VTVPNWPFFN RNPLKWLDAA EAERHPRPQV SAGGAAGGGK KKSGKNK

Best Arabidopsis Sequence Match ( AT4G40042.1 )
(BLAST)

1: MDWQGQKLAE QLMQILLLIA AVVSFVVGYT TASFRMMMLI YAGGVVLTTL ITIPNWPCFN RHHLKWLDPS EAEKHPKPQV VVVSSKKKSS SKK

Arabidopsis Description

At4g40042 [Source:UniProtKB/TrEMBL;Acc:Q84MC9]
SUBAcon: [plasma membrane,golgi,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.