Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, golgi, plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 1
- extracellular 4
- endoplasmic reticulum 6
- vacuole 4
- plasma membrane 5
- golgi 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT4G40042.1 | Thale cress | golgi, plasma membrane, vacuole | 60.42 | 62.37 |
| KRG97437 | Soybean | golgi, plasma membrane | 60.42 | 62.37 |
| AT2G22425.1 | Thale cress | endoplasmic reticulum, extracellular, golgi | 59.38 | 61.96 |
| CDX76926 | Canola | golgi, plasma membrane | 57.29 | 61.8 |
| CDX69361 | Canola | golgi, plasma membrane | 58.33 | 61.54 |
| KRH31466 | Soybean | golgi, plasma membrane | 59.38 | 61.29 |
| CDX75701 | Canola | golgi, plasma membrane | 57.29 | 60.44 |
| Bra011812.1-P | Field mustard | golgi, plasma membrane | 57.29 | 60.44 |
| Zm00001d013642_P001 | Maize | golgi, plasma membrane, vacuole | 60.42 | 60.42 |
| TraesCS3A01G354600.1 | Wheat | golgi, plasma membrane, vacuole | 60.42 | 59.79 |
| TraesCS3B01G387600.1 | Wheat | golgi | 60.42 | 59.79 |
| CDY13762 | Canola | endoplasmic reticulum, golgi | 55.21 | 59.55 |
| EER91131 | Sorghum | golgi, plasma membrane, vacuole | 59.38 | 58.76 |
| TraesCS3D01G348600.1 | Wheat | golgi, plasma membrane, vacuole | 59.38 | 58.76 |
| Bra038525.1-P | Field mustard | endoplasmic reticulum, golgi | 54.17 | 58.43 |
| KRH42659 | Soybean | golgi, plasma membrane | 56.25 | 58.06 |
| KRH58761 | Soybean | plasma membrane | 56.25 | 58.06 |
| HORVU3Hr1G087090.2 | Barley | endoplasmic reticulum | 52.08 | 57.47 |
| Zm00001d033479_P001 | Maize | extracellular | 51.04 | 56.98 |
| VIT_01s0010g03360.t01 | Wine grape | golgi, nucleus, plasma membrane | 61.46 | 56.19 |
| Solyc03g005740.1.1 | Tomato | extracellular, golgi, plasma membrane | 44.79 | 53.75 |
| GSMUA_Achr1P13530_001 | Banana | mitochondrion | 70.83 | 48.92 |
| KRH00092 | Soybean | extracellular, plasma membrane, vacuole | 36.46 | 44.87 |
| GSMUA_Achr8P28280_001 | Banana | golgi, mitochondrion, plasma membrane, plastid | 73.96 | 44.38 |
| Os12t0438900-01 | Rice | endoplasmic reticulum, plasma membrane, plastid | 61.46 | 42.14 |
Protein Annotations
| MapMan:18.10.1.1.2 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005783 | GO:GO:0005787 | GO:GO:0006465 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0008233 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016787 | GO:GO:0019538 |
| EnsemblPlantsGene:GSMUA_Achr3G16130_001 | EnsemblPlants:GSMUA_Achr3P16130_001 | EnsemblPlants:GSMUA_Achr3T16130_001 | UniProt:M0SF29 | PFAM:PF06645 | PANTHER:PTHR13202 |
| PANTHER:PTHR13202:SF2 | InterPro:SPC12 | TMHMM:TMhelix | UniParc:UPI000295AA7C | SEG:seg | : |
Description
Probable signal peptidase complex subunit 1 [Source:GMGC_GENE;Acc:GSMUA_Achr3G16130_001]
Coordinates
chr3:-:17244020..17244310
Molecular Weight (calculated)
10756.3 Da
IEP (calculated)
10.060
GRAVY (calculated)
0.154
Length
96 amino acids
Sequence
(BLAST)
(BLAST)
1: MDWQGQKLAN ILMQIILVVS TITAFGIGYS IGSFQMMMFT YAGGVVLTAL ITVPNWQFFN HHHLKWLDPS EAERHPMPQL NDAAVAAPKK KATKIK
1: MDWQGQKLAE QLMQILLLIA AVVSFVVGYT TASFRMMMLI YAGGVVLTTL ITIPNWPCFN RHHLKWLDPS EAEKHPKPQV VVVSSKKKSS SKK
Arabidopsis Description
At4g40042 [Source:UniProtKB/TrEMBL;Acc:Q84MC9]
SUBAcon: [plasma membrane,golgi,vacuole]
SUBAcon: [plasma membrane,golgi,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.