Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, golgi
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 5
- vacuole 5
- plasma membrane 6
- golgi 6
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY13762 | Canola | endoplasmic reticulum, golgi | 94.38 | 94.38 |
| AT2G22425.1 | Thale cress | endoplasmic reticulum, extracellular, golgi | 91.01 | 88.04 |
| CDX69361 | Canola | golgi, plasma membrane | 77.53 | 75.82 |
| CDX75701 | Canola | golgi, plasma membrane | 77.53 | 75.82 |
| KRH31466 | Soybean | golgi, plasma membrane | 69.66 | 66.67 |
| KRG97437 | Soybean | golgi, plasma membrane | 69.66 | 66.67 |
| KRH58761 | Soybean | plasma membrane | 66.29 | 63.44 |
| KRH42659 | Soybean | golgi, plasma membrane | 65.17 | 62.37 |
| Zm00001d033479_P001 | Maize | extracellular | 59.55 | 61.63 |
| EER91131 | Sorghum | golgi, plasma membrane, vacuole | 65.17 | 59.79 |
| TraesCS3D01G348600.1 | Wheat | golgi, plasma membrane, vacuole | 65.17 | 59.79 |
| Zm00001d013642_P001 | Maize | golgi, plasma membrane, vacuole | 64.04 | 59.38 |
| TraesCS3A01G354600.1 | Wheat | golgi, plasma membrane, vacuole | 64.04 | 58.76 |
| TraesCS3B01G387600.1 | Wheat | golgi | 64.04 | 58.76 |
| Solyc03g005740.1.1 | Tomato | extracellular, golgi, plasma membrane | 51.69 | 57.5 |
| GSMUA_Achr3P16130_001 | Banana | endoplasmic reticulum, golgi, plasma membrane | 61.8 | 57.29 |
| HORVU3Hr1G087090.2 | Barley | endoplasmic reticulum | 55.06 | 56.32 |
| VIT_01s0010g03360.t01 | Wine grape | golgi, nucleus, plasma membrane | 66.29 | 56.19 |
| KRH00092 | Soybean | extracellular, plasma membrane, vacuole | 41.57 | 47.44 |
| Os12t0438900-01 | Rice | endoplasmic reticulum, plasma membrane, plastid | 67.42 | 42.86 |
| GSMUA_Achr1P13530_001 | Banana | mitochondrion | 62.92 | 40.29 |
| GSMUA_Achr8P28280_001 | Banana | golgi, mitochondrion, plasma membrane, plastid | 71.91 | 40.0 |
Protein Annotations
| KEGG:00261+3.4.-.- | KEGG:00310+3.4.-.- | KEGG:00550+3.4.-.- | KEGG:00780+3.4.-.- | MapMan:18.10.1.1.2 | GO:A0A078CI91 |
| EnsemblPlants:CDX76926 | ProteinID:CDX76926 | ProteinID:CDX76926.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005783 | GO:GO:0005787 | GO:GO:0006465 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008233 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 |
| GO:GO:0016787 | GO:GO:0019538 | EnsemblPlantsGene:GSBRNA2T00127458001 | PFAM:PF06645 | PANTHER:PTHR13202 | PANTHER:PTHR13202:SF2 |
| InterPro:SPC12 | TMHMM:TMhelix | UniParc:UPI0004EF3CAF | SEG:seg | : | : |
Description
BnaC08g35120D
Coordinates
chrLK031808:-:2108816..2109263
Molecular Weight (calculated)
10047.5 Da
IEP (calculated)
10.143
GRAVY (calculated)
0.140
Length
89 amino acids
Sequence
(BLAST)
(BLAST)
1: MDWQGQKVVE QLMQILLVIS GVVAVVVGYA TESFRAMMLI YAGGVVLATL VTVPNWPFYN HHPLKWLDPS EAEKHPKPQV VAKKRFSKK
1: MDWQGQKLVE QLMQILLVIS GVVAVVVGYT TESFRTMMLI YAGGVVLTTL VTVPNWPFYN LHPLKWLDPS EAEKHPKPEV VSVASKKKFS KK
Arabidopsis Description
Probable signal peptidase complex subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:Q944J0]
SUBAcon: [endoplasmic reticulum,golgi,extracellular]
SUBAcon: [endoplasmic reticulum,golgi,extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.