Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, golgi
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 5
- vacuole 5
- plasma membrane 6
- golgi 6
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX75701 | Canola | golgi, plasma membrane | 97.8 | 97.8 |
| AT4G40042.1 | Thale cress | golgi, plasma membrane, vacuole | 87.91 | 86.02 |
| CDY13762 | Canola | endoplasmic reticulum, golgi | 76.92 | 78.65 |
| CDX76926 | Canola | golgi, plasma membrane | 75.82 | 77.53 |
| KRH58761 | Soybean | plasma membrane | 73.63 | 72.04 |
| KRH42659 | Soybean | golgi, plasma membrane | 73.63 | 72.04 |
| KRG97437 | Soybean | golgi, plasma membrane | 72.53 | 70.97 |
| KRH31466 | Soybean | golgi, plasma membrane | 70.33 | 68.82 |
| VIT_01s0010g03360.t01 | Wine grape | golgi, nucleus, plasma membrane | 73.63 | 63.81 |
| Solyc03g005740.1.1 | Tomato | extracellular, golgi, plasma membrane | 54.95 | 62.5 |
| EER91131 | Sorghum | golgi, plasma membrane, vacuole | 65.93 | 61.86 |
| Zm00001d013642_P001 | Maize | golgi, plasma membrane, vacuole | 64.84 | 61.46 |
| TraesCS3D01G348600.1 | Wheat | golgi, plasma membrane, vacuole | 64.84 | 60.82 |
| TraesCS3A01G354600.1 | Wheat | golgi, plasma membrane, vacuole | 63.74 | 59.79 |
| TraesCS3B01G387600.1 | Wheat | golgi | 63.74 | 59.79 |
| GSMUA_Achr3P16130_001 | Banana | endoplasmic reticulum, golgi, plasma membrane | 61.54 | 58.33 |
| Zm00001d033479_P001 | Maize | extracellular | 54.95 | 58.14 |
| HORVU3Hr1G087090.2 | Barley | endoplasmic reticulum | 53.85 | 56.32 |
| KRH00092 | Soybean | extracellular, plasma membrane, vacuole | 40.66 | 47.44 |
| GSMUA_Achr1P13530_001 | Banana | mitochondrion | 69.23 | 45.32 |
| GSMUA_Achr8P28280_001 | Banana | golgi, mitochondrion, plasma membrane, plastid | 76.92 | 43.75 |
| Os12t0438900-01 | Rice | endoplasmic reticulum, plasma membrane, plastid | 67.03 | 43.57 |
Protein Annotations
| KEGG:00261+3.4.-.- | KEGG:00310+3.4.-.- | KEGG:00550+3.4.-.- | KEGG:00780+3.4.-.- | MapMan:18.10.1.1.2 | GO:A0A078BX21 |
| EnsemblPlants:CDX69361 | ProteinID:CDX69361 | ProteinID:CDX69361.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005783 | GO:GO:0005787 | GO:GO:0006465 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008233 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 |
| GO:GO:0016787 | GO:GO:0019538 | EnsemblPlantsGene:GSBRNA2T00131212001 | PFAM:PF06645 | PANTHER:PTHR13202 | PANTHER:PTHR13202:SF2 |
| InterPro:SPC12 | TMHMM:TMhelix | UniParc:UPI0004EBD9FF | SEG:seg | : | : |
Description
BnaC01g00920D
Coordinates
chrLK031789:-:4372819..4373606
Molecular Weight (calculated)
10173.6 Da
IEP (calculated)
10.420
GRAVY (calculated)
0.053
Length
91 amino acids
Sequence
(BLAST)
(BLAST)
1: MDWQGQKLAE QLMQILLLIA AVVAFVVGYT TASFRTMMLI YAGGVGVTTL ITVPNWPFFN RHPLKWLDPS EAEKHPKPEV AVSSKKKSSK K
1: MDWQGQKLAE QLMQILLLIA AVVSFVVGYT TASFRMMMLI YAGGVVLTTL ITIPNWPCFN RHHLKWLDPS EAEKHPKPQV VVVSSKKKSS SKK
Arabidopsis Description
At4g40042 [Source:UniProtKB/TrEMBL;Acc:Q84MC9]
SUBAcon: [plasma membrane,golgi,vacuole]
SUBAcon: [plasma membrane,golgi,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.