Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, golgi, vacuole
Predictor Summary:
Predictor Summary:
- extracellular 4
- endoplasmic reticulum 4
- vacuole 5
- plasma membrane 5
- golgi 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d033479_P001 | Maize | extracellular | 84.38 | 94.19 |
| EER91131 | Sorghum | golgi, plasma membrane, vacuole | 93.75 | 92.78 |
| HORVU3Hr1G087090.2 | Barley | endoplasmic reticulum | 78.12 | 86.21 |
| TraesCS3B01G387600.1 | Wheat | golgi | 86.46 | 85.57 |
| TraesCS3A01G354600.1 | Wheat | golgi, plasma membrane, vacuole | 86.46 | 85.57 |
| TraesCS3D01G348600.1 | Wheat | golgi, plasma membrane, vacuole | 85.42 | 84.54 |
| CDX69361 | Canola | golgi, plasma membrane | 61.46 | 64.84 |
| KRH31466 | Soybean | golgi, plasma membrane | 62.5 | 64.52 |
| CDX76926 | Canola | golgi, plasma membrane | 59.38 | 64.04 |
| CDX75701 | Canola | golgi, plasma membrane | 60.42 | 63.74 |
| Bra011812.1-P | Field mustard | golgi, plasma membrane | 60.42 | 63.74 |
| KRG97437 | Soybean | golgi, plasma membrane | 61.46 | 63.44 |
| AT2G22425.1 | Thale cress | endoplasmic reticulum, extracellular, golgi | 60.42 | 63.04 |
| Bra038525.1-P | Field mustard | endoplasmic reticulum, golgi | 58.33 | 62.92 |
| AT4G40042.1 | Thale cress | golgi, plasma membrane, vacuole | 60.42 | 62.37 |
| KRH58761 | Soybean | plasma membrane | 60.42 | 62.37 |
| KRH42659 | Soybean | golgi, plasma membrane | 60.42 | 62.37 |
| CDY13762 | Canola | endoplasmic reticulum, golgi | 57.29 | 61.8 |
| GSMUA_Achr3P16130_001 | Banana | endoplasmic reticulum, golgi, plasma membrane | 60.42 | 60.42 |
| Os12t0438900-01 | Rice | endoplasmic reticulum, plasma membrane, plastid | 85.42 | 58.57 |
| Solyc03g005740.1.1 | Tomato | extracellular, golgi, plasma membrane | 47.92 | 57.5 |
| VIT_01s0010g03360.t01 | Wine grape | golgi, nucleus, plasma membrane | 61.46 | 56.19 |
| KRH00092 | Soybean | extracellular, plasma membrane, vacuole | 37.5 | 46.15 |
| GSMUA_Achr1P13530_001 | Banana | mitochondrion | 62.5 | 43.17 |
| GSMUA_Achr8P28280_001 | Banana | golgi, mitochondrion, plasma membrane, plastid | 69.79 | 41.88 |
Protein Annotations
| EntrezGene:100285983 | MapMan:18.10.1.1.2 | ProteinID:AQK64067.1 | UniProt:B6SIK6 | EMBL:BT063508 | EMBL:EU952571 |
| EMBL:EU961192 | EMBL:EU975017 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005783 | GO:GO:0005787 | GO:GO:0006465 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0008233 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016787 |
| GO:GO:0019538 | PFAM:PF06645 | PANTHER:PTHR13202 | InterPro:SPC12 | TMHMM:TMhelix | UniParc:UPI000182BB11 |
| EnsemblPlantsGene:Zm00001d013642 | EnsemblPlants:Zm00001d013642_P001 | EnsemblPlants:Zm00001d013642_T001 | SEG:seg | : | : |
Description
Probable signal peptidase complex subunit 1
Coordinates
chr5:+:16101000..16102255
Molecular Weight (calculated)
10453.9 Da
IEP (calculated)
10.747
GRAVY (calculated)
0.159
Length
96 amino acids
Sequence
(BLAST)
(BLAST)
1: MDWLGQKRAE MLMQVLLVAS AVAAFLVGYV RADFQLMLLV YAGGVVLTAL VTVPNWPFFN RNPLKWLDAA EAERHPRPQV SAGAAAGGKK KSGKNK
1: MDWQGQKLAE QLMQILLLIA AVVSFVVGYT TASFRMMMLI YAGGVVLTTL ITIPNWPCFN RHHLKWLDPS EAEKHPKPQV VVVSSKKKSS SKK
Arabidopsis Description
At4g40042 [Source:UniProtKB/TrEMBL;Acc:Q84MC9]
SUBAcon: [plasma membrane,golgi,vacuole]
SUBAcon: [plasma membrane,golgi,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.