Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, golgi
Predictor Summary:
Predictor Summary:
- plastid 1
- extracellular 3
- endoplasmic reticulum 4
- vacuole 3
- plasma membrane 4
- golgi 4
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRG97437 | Soybean | golgi, plasma membrane | 89.25 | 89.25 |
| KRH58761 | Soybean | plasma membrane | 78.49 | 78.49 |
| KRH42659 | Soybean | golgi, plasma membrane | 78.49 | 78.49 |
| KRH00092 | Soybean | extracellular, plasma membrane, vacuole | 59.14 | 70.51 |
| CDX69361 | Canola | golgi, plasma membrane | 68.82 | 70.33 |
| CDX76926 | Canola | golgi, plasma membrane | 66.67 | 69.66 |
| Bra011812.1-P | Field mustard | golgi, plasma membrane | 67.74 | 69.23 |
| CDX75701 | Canola | golgi, plasma membrane | 67.74 | 69.23 |
| AT2G22425.1 | Thale cress | endoplasmic reticulum, extracellular, golgi | 67.74 | 68.48 |
| AT4G40042.1 | Thale cress | golgi, plasma membrane, vacuole | 67.74 | 67.74 |
| Bra038525.1-P | Field mustard | endoplasmic reticulum, golgi | 63.44 | 66.29 |
| CDY13762 | Canola | endoplasmic reticulum, golgi | 62.37 | 65.17 |
| TraesCS3D01G348600.1 | Wheat | golgi, plasma membrane, vacuole | 66.67 | 63.92 |
| TraesCS3B01G387600.1 | Wheat | golgi | 65.59 | 62.89 |
| TraesCS3A01G354600.1 | Wheat | golgi, plasma membrane, vacuole | 65.59 | 62.89 |
| Zm00001d013642_P001 | Maize | golgi, plasma membrane, vacuole | 64.52 | 62.5 |
| VIT_01s0010g03360.t01 | Wine grape | golgi, nucleus, plasma membrane | 69.89 | 61.9 |
| Solyc03g005740.1.1 | Tomato | extracellular, golgi, plasma membrane | 52.69 | 61.25 |
| HORVU3Hr1G087090.2 | Barley | endoplasmic reticulum | 56.99 | 60.92 |
| EER91131 | Sorghum | golgi, plasma membrane, vacuole | 63.44 | 60.82 |
| GSMUA_Achr3P16130_001 | Banana | endoplasmic reticulum, golgi, plasma membrane | 61.29 | 59.38 |
| Zm00001d033479_P001 | Maize | extracellular | 54.84 | 59.3 |
| Os12t0438900-01 | Rice | endoplasmic reticulum, plasma membrane, plastid | 67.74 | 45.0 |
| GSMUA_Achr1P13530_001 | Banana | mitochondrion | 62.37 | 41.73 |
| GSMUA_Achr8P28280_001 | Banana | golgi, mitochondrion, plasma membrane, plastid | 66.67 | 38.75 |
Protein Annotations
| EntrezGene:100801319 | MapMan:18.10.1.1.2 | EMBL:ACUP02007145 | EnsemblPlantsGene:GLYMA_11G249600 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005783 | GO:GO:0005787 |
| GO:GO:0006465 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008233 | GO:GO:0009987 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016787 | GO:GO:0019538 | GO:GO:0030176 | GO:GO:0045047 |
| UniProt:I1LN93 | EnsemblPlants:KRH31466 | ProteinID:KRH31466 | ProteinID:KRH31466.1 | PFAM:PF06645 | PANTHER:PTHR13202 |
| InterPro:SPC12 | TMHMM:TMhelix | UniParc:UPI000233D84C | SEG:seg | : | : |
Description
hypothetical protein
Coordinates
chr11:-:34164727..34166706
Molecular Weight (calculated)
10539.1 Da
IEP (calculated)
10.223
GRAVY (calculated)
0.080
Length
93 amino acids
Sequence
(BLAST)
(BLAST)
1: MDWQGQKITE QLMQLIIVAF AVIAFATGYL MASFQMMILI YAGGVVLTTL VTVPNWPFFN HHPLKWLDPS ELEKHPKPQP SPNVSSKKKS VKK
1: MDWQGQKLVE QLMQILLVIS GVVAVVVGYT TESFRTMMLI YAGGVVLTTL VTVPNWPFYN LHPLKWLDPS EAEKHPKPEV VSVASKKKFS KK
Arabidopsis Description
Probable signal peptidase complex subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:Q944J0]
SUBAcon: [endoplasmic reticulum,golgi,extracellular]
SUBAcon: [endoplasmic reticulum,golgi,extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.