Factsheet for Solyc03g005740.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, golgi, extracellular

Predictor Summary:

extracellular 6
endoplasmic reticulum 6
vacuole 5
plasma membrane 6
golgi 6
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, golgi, plasma membrane
Any Predictor:	nucleus, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	golgi
Plant-mPloc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g071920.2.1
Solyc03g005980.2.1
Solyc06g074170.2.1
Solyc07g066170.2.1
Solyc11g068750.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G40042.1	Solyc02g071920.2.1	AT4G19030.1	21798944
AT4G40042.1	Solyc03g005980.2.1	AT4G19030.1	21798944
AT4G40042.1	Solyc07g066170.2.1	AT4G26455.1	21798944
AT4G40042.1	Solyc06g074170.2.1	AT5G22290.1	21798944
AT4G40042.1	Solyc11g068750.1.1	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH58761	Soybean	plasma membrane	65.0	55.91
CDX69361	Canola	golgi, plasma membrane	62.5	54.95
Zm00001d033479_P001	Maize	extracellular	58.75	54.65
AT2G22425.1	Thale cress	endoplasmic reticulum, extracellular, golgi	62.5	54.35
KRH42659	Soybean	golgi, plasma membrane	62.5	53.76
Bra038525.1-P	Field mustard	endoplasmic reticulum, golgi	58.75	52.81
CDY13762	Canola	endoplasmic reticulum, golgi	58.75	52.81
Bra011812.1-P	Field mustard	golgi, plasma membrane	60.0	52.75
CDX75701	Canola	golgi, plasma membrane	60.0	52.75
KRH31466	Soybean	golgi, plasma membrane	61.25	52.69
CDX76926	Canola	golgi, plasma membrane	57.5	51.69
KRG97437	Soybean	golgi, plasma membrane	60.0	51.61
AT4G40042.1	Thale cress	golgi, plasma membrane, vacuole	58.75	50.54
HORVU3Hr1G087090.2	Barley	endoplasmic reticulum	53.75	49.43
Zm00001d013642_P001	Maize	golgi, plasma membrane, vacuole	57.5	47.92
VIT_01s0010g03360.t01	Wine grape	golgi, nucleus, plasma membrane	62.5	47.62
EER91131	Sorghum	golgi, plasma membrane, vacuole	57.5	47.42
GSMUA_Achr3P16130_001	Banana	endoplasmic reticulum, golgi, plasma membrane	53.75	44.79
TraesCS3A01G354600.1	Wheat	golgi, plasma membrane, vacuole	53.75	44.33
TraesCS3B01G387600.1	Wheat	golgi	53.75	44.33
TraesCS3D01G348600.1	Wheat	golgi, plasma membrane, vacuole	52.5	43.3
KRH00092	Soybean	extracellular, plasma membrane, vacuole	37.5	38.46
GSMUA_Achr1P13530_001	Banana	mitochondrion	58.75	33.81
Os12t0438900-01	Rice	endoplasmic reticulum, plasma membrane, plastid	53.75	30.71
GSMUA_Achr8P28280_001	Banana	golgi, mitochondrion, plasma membrane, plastid	58.75	29.38

Protein Annotations

MapMan:18.10.1.1.2	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005783	GO:GO:0005787	GO:GO:0006465	GO:GO:0006810	GO:GO:0008150
GO:GO:0008152	GO:GO:0008233	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787
GO:GO:0019538	GO:GO:0030176	GO:GO:0045047	UniProt:K4BDZ8	PFAM:PF06645	PANTHER:PTHR13202
PANTHER:PTHR13202:SF2	InterPro:SPC12	EnsemblPlantsGene:Solyc03g005740.1	EnsemblPlants:Solyc03g005740.1.1	TMHMM:TMhelix	UniParc:UPI000276926B
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr3:-:519948..520190

Molecular Weight (calculated)

8851.0 Da

IEP (calculated)

10.464

GRAVY (calculated)

0.231

Length

80 amino acids

Sequence
(BLAST)

1: MQILLVSFGV VAFLTGYMLG SFQTMLLTYA GGVVFTALLT IPNWPVYNRN PLNWLDPSVV EKYPKPLPAT TGSKKKSTKK

Best Arabidopsis Sequence Match ( AT2G22425.2 )
(BLAST)

1: MDWQGQKLVE QLMQILLVIS GVVAVVVGYT TESFRTMMLI YAGGVVLTTL VTVPNWPFYN LHPLKWLDPS EAEKHPKPEV VSVASKKKFS KK

Arabidopsis Description

Probable signal peptidase complex subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:Q944J0]
SUBAcon: [endoplasmic reticulum,golgi,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.