Factsheet for Zm00001d033479_P001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 6
endoplasmic reticulum 4
vacuole 4
plasma membrane 4
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	golgi
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d003334_P001
Zm00001d005997_P002
Zm00001d017390_P001
Zm00001d020879_P001
Zm00001d025667_P001
Zm00001d025939_P003
Zm00001d036342_P001
Zm00001d049553_P001
Zm00001d051288_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G40042.1	Zm00001d017390_P001	AT3G60600.1	21798944
AT4G40042.1	Zm00001d025939_P003	AT3G60600.1	21798944
AT4G40042.1	Zm00001d036342_P001	AT3G60600.1	21798944
AT4G40042.1	Zm00001d049553_P001	AT3G60600.1	21798944
AT4G40042.1	Zm00001d051288_P001	AT3G60600.1	21798944
AT4G40042.1	Zm00001d003334_P001	AT4G26455.1	21798944
AT4G40042.1	Zm00001d005997_P002	AT4G26455.1	21798944
AT4G40042.1	Zm00001d020879_P001	AT4G26455.1	21798944
AT4G40042.1	Zm00001d025667_P001	AT4G26455.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU3Hr1G087090.2	Barley	endoplasmic reticulum	86.05	85.06
Zm00001d013642_P001	Maize	golgi, plasma membrane, vacuole	94.19	84.38
EER91131	Sorghum	golgi, plasma membrane, vacuole	90.7	80.41
TraesCS3B01G387600.1	Wheat	golgi	86.05	76.29
TraesCS3A01G354600.1	Wheat	golgi, plasma membrane, vacuole	86.05	76.29
TraesCS3D01G348600.1	Wheat	golgi, plasma membrane, vacuole	84.88	75.26
CDX76926	Canola	golgi, plasma membrane	61.63	59.55
Solyc03g005740.1.1	Tomato	extracellular, golgi, plasma membrane	54.65	58.75
Bra038525.1-P	Field mustard	endoplasmic reticulum, golgi	60.47	58.43
CDY13762	Canola	endoplasmic reticulum, golgi	59.3	57.3
AT2G22425.1	Thale cress	endoplasmic reticulum, extracellular, golgi	59.3	55.43
CDX69361	Canola	golgi, plasma membrane	58.14	54.95
KRH31466	Soybean	golgi, plasma membrane	59.3	54.84
CDX75701	Canola	golgi, plasma membrane	56.98	53.85
Bra011812.1-P	Field mustard	golgi, plasma membrane	56.98	53.85
AT4G40042.1	Thale cress	golgi, plasma membrane, vacuole	56.98	52.69
KRG97437	Soybean	golgi, plasma membrane	56.98	52.69
KRH42659	Soybean	golgi, plasma membrane	55.81	51.61
KRH58761	Soybean	plasma membrane	55.81	51.61
Os12t0438900-01	Rice	endoplasmic reticulum, plasma membrane, plastid	83.72	51.43
GSMUA_Achr3P16130_001	Banana	endoplasmic reticulum, golgi, plasma membrane	56.98	51.04
VIT_01s0010g03360.t01	Wine grape	golgi, nucleus, plasma membrane	58.14	47.62
KRH00092	Soybean	extracellular, plasma membrane, vacuole	34.88	38.46
GSMUA_Achr1P13530_001	Banana	mitochondrion	56.98	35.25
GSMUA_Achr8P28280_001	Banana	golgi, mitochondrion, plasma membrane, plastid	63.95	34.38

Protein Annotations

MapMan:18.10.1.1.2	UniProt:A0A1D6KZ64	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0005787	GO:GO:0006465	GO:GO:0008150
GO:GO:0008152	GO:GO:0008233	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787
GO:GO:0019538	ProteinID:ONM07667.1	PFAM:PF06645	PANTHER:PTHR13202	PANTHER:PTHR13202:SF2	InterPro:SPC12
TMHMM:TMhelix	UniParc:UPI00084309EB	EnsemblPlantsGene:Zm00001d033479	EnsemblPlants:Zm00001d033479_P001	EnsemblPlants:Zm00001d033479_T001	SEG:seg

Description

Signal peptidase complex subunit 1

Coordinates

chr1:+:263880369..263880629

Molecular Weight (calculated)

9350.6 Da

IEP (calculated)

10.777

GRAVY (calculated)

0.285

Length

86 amino acids

Sequence
(BLAST)

1: MLMQVLLVAS AVVAFLVGYV RADFQLMLLV YAGGVVLTAL VTVPNWPFYN RNPLKWLDAA EAERHPRPQV SAAPAAGGKK RSGKNK

Best Arabidopsis Sequence Match ( AT4G40042.1 )
(BLAST)

1: MDWQGQKLAE QLMQILLLIA AVVSFVVGYT TASFRMMMLI YAGGVVLTTL ITIPNWPCFN RHHLKWLDPS EAEKHPKPQV VVVSSKKKSS SKK

Arabidopsis Description

At4g40042 [Source:UniProtKB/TrEMBL;Acc:Q84MC9]
SUBAcon: [plasma membrane,golgi,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.