Factsheet for GSMUA_Achr8P28280_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plasma membrane, golgi, plastid

Predictor Summary:

plastid 2
mitochondrion 2
golgi 2
endoplasmic reticulum 2
extracellular 1
vacuole 1
plasma membrane 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, mitochondrion, plasma membrane, plastid
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	golgi
Plant-mPloc:	endoplasmic reticulum
Predotar:	mitochondrion
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr1P20280_001
GSMUA_Achr3P04120_001
GSMUA_Achr4P01630_001
GSMUA_Achr4P10230_001
GSMUA_Achr5P20880_001
GSMUA_Achr8P11120_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G40042.1	GSMUA_Achr11P...	AT3G60600.1	21798944
AT4G40042.1	GSMUA_Achr11P...	AT3G60600.1	21798944
AT4G40042.1	GSMUA_Achr1P20280_001	AT3G60600.1	21798944
AT4G40042.1	GSMUA_Achr5P20880_001	AT3G60600.1	21798944
AT4G40042.1	GSMUA_Achr8P11120_001	AT3G60600.1	21798944
AT4G40042.1	GSMUA_Achr4P10230_001	AT4G19030.1	21798944
AT4G40042.1	GSMUA_Achr10P...	AT4G26455.1	21798944
AT4G40042.1	GSMUA_Achr3P04120_001	AT4G26455.1	21798944
AT4G40042.1	GSMUA_Achr4P01630_001	AT4G26455.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX69361	Canola	golgi, plasma membrane	43.75	76.92
AT2G22425.1	Thale cress	endoplasmic reticulum, extracellular, golgi	43.75	76.09
Bra011812.1-P	Field mustard	golgi, plasma membrane	43.12	75.82
CDX75701	Canola	golgi, plasma membrane	43.12	75.82
GSMUA_Achr3P16130_001	Banana	endoplasmic reticulum, golgi, plasma membrane	44.38	73.96
AT4G40042.1	Thale cress	golgi, plasma membrane, vacuole	42.5	73.12
CDY13762	Canola	endoplasmic reticulum, golgi	40.62	73.03
Bra038525.1-P	Field mustard	endoplasmic reticulum, golgi	40.0	71.91
CDX76926	Canola	golgi, plasma membrane	40.0	71.91
TraesCS3D01G348600.1	Wheat	golgi, plasma membrane, vacuole	42.5	70.1
Zm00001d013642_P001	Maize	golgi, plasma membrane, vacuole	41.88	69.79
TraesCS3B01G387600.1	Wheat	golgi	41.88	69.07
TraesCS3A01G354600.1	Wheat	golgi, plasma membrane, vacuole	41.88	69.07
KRG97437	Soybean	golgi, plasma membrane	39.38	67.74
KRH31466	Soybean	golgi, plasma membrane	38.75	66.67
HORVU3Hr1G087090.2	Barley	endoplasmic reticulum	36.25	66.67
KRH42659	Soybean	golgi, plasma membrane	38.12	65.59
KRH58761	Soybean	plasma membrane	38.12	65.59
EER91131	Sorghum	golgi, plasma membrane, vacuole	39.38	64.95
Zm00001d033479_P001	Maize	extracellular	34.38	63.95
GSMUA_Achr1P13530_001	Banana	mitochondrion	53.75	61.87
VIT_01s0010g03360.t01	Wine grape	golgi, nucleus, plasma membrane	40.0	60.95
Solyc03g005740.1.1	Tomato	extracellular, golgi, plasma membrane	29.38	58.75
Os12t0438900-01	Rice	endoplasmic reticulum, plasma membrane, plastid	43.12	49.29
KRH00092	Soybean	extracellular, plasma membrane, vacuole	23.12	47.44

Protein Annotations

MapMan:18.10.1.1.2	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005783	GO:GO:0005787	GO:GO:0006465	GO:GO:0008150	GO:GO:0008152
GO:GO:0008233	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	GO:GO:0019538
EnsemblPlantsGene:GSMUA_Achr8G28280_001	EnsemblPlants:GSMUA_Achr8P28280_001	EnsemblPlants:GSMUA_Achr8T28280_001	UniProt:M0TUD1	PFAM:PF06645	PANTHER:PTHR13202
InterPro:SPC12	TMHMM:TMhelix	UniParc:UPI000296D103	SEG:seg	:	:

Description

Probable signal peptidase complex subunit 1 [Source:GMGC_GENE;Acc:GSMUA_Achr8G28280_001]

Coordinates

chr8:-:31161360..31162330

Molecular Weight (calculated)

18049.2 Da

IEP (calculated)

11.026

GRAVY (calculated)

0.087

Length

160 amino acids

Sequence
(BLAST)

001: MLNWFILNTS SSRAGPWFYY KSPTVTLPLP TGRSLFLVIG KLVWGLLGLG FWLSDRSIYF FRSHQMDWQG QKRAEILMQI MLVVSAVAAF GVGYTIGSFR
101: TMMLAYAGGV VLTTLITVPN WPFFNRHPLK WLDPSEAERH PKPQVNSAAA SSKKKAAKHK

Best Arabidopsis Sequence Match ( AT4G40042.1 )
(BLAST)

1: MDWQGQKLAE QLMQILLLIA AVVSFVVGYT TASFRMMMLI YAGGVVLTTL ITIPNWPCFN RHHLKWLDPS EAEKHPKPQV VVVSSKKKSS SKK

Arabidopsis Description

At4g40042 [Source:UniProtKB/TrEMBL;Acc:Q84MC9]
SUBAcon: [plasma membrane,golgi,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.