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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum, plastid, plasma membrane

Predictor Summary:
  • plastid 3
  • endoplasmic reticulum 3
  • extracellular 1
  • vacuole 1
  • plasma membrane 2
  • golgi 1
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS3B01G387600.1 Wheat golgi 62.14 89.69
TraesCS3A01G354600.1 Wheat golgi, plasma membrane, vacuole 62.14 89.69
HORVU3Hr1G087090.2 Barley endoplasmic reticulum 55.71 89.66
TraesCS3D01G348600.1 Wheat golgi, plasma membrane, vacuole 61.43 88.66
Zm00001d013642_P001 Maize golgi, plasma membrane, vacuole 58.57 85.42
Zm00001d033479_P001 Maize extracellular 51.43 83.72
EER91131 Sorghum golgi, plasma membrane, vacuole 57.86 83.51
KRH31466 Soybean golgi, plasma membrane 45.0 67.74
CDX76926 Canola golgi, plasma membrane 42.86 67.42
CDX69361 Canola golgi, plasma membrane 43.57 67.03
Bra038525.1-P Field mustard endoplasmic reticulum, golgi 42.14 66.29
Bra011812.1-P Field mustard golgi, plasma membrane 42.86 65.93
CDX75701 Canola golgi, plasma membrane 42.86 65.93
KRH58761 Soybean plasma membrane 43.57 65.59
KRH42659 Soybean golgi, plasma membrane 43.57 65.59
AT2G22425.1 Thale cress endoplasmic reticulum, extracellular, golgi 42.86 65.22
CDY13762 Canola endoplasmic reticulum, golgi 41.43 65.17
KRG97437 Soybean golgi, plasma membrane 42.86 64.52
AT4G40042.1 Thale cress golgi, plasma membrane, vacuole 42.86 64.52
VIT_01s0010g03360.t01 Wine grape golgi, nucleus, plasma membrane 46.43 61.9
GSMUA_Achr3P16130_001 Banana endoplasmic reticulum, golgi, plasma membrane 42.14 61.46
Solyc03g005740.1.1 Tomato extracellular, golgi, plasma membrane 30.71 53.75
KRH00092 Soybean extracellular, plasma membrane, vacuole 27.14 48.72
GSMUA_Achr1P13530_001 Banana mitochondrion 45.71 46.04
GSMUA_Achr8P28280_001 Banana golgi, mitochondrion, plasma membrane, plastid 49.29 43.12
Protein Annotations
MapMan:18.10.1.1.2UniProt:A0A0P0Y9Q3ProteinID:BAT16977.1GO:GO:0003674GO:GO:0003824GO:GO:0005575
GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0005783GO:GO:0005787GO:GO:0006465
GO:GO:0006810GO:GO:0008150GO:GO:0008152GO:GO:0008233GO:GO:0009987GO:GO:0016020
GO:GO:0016021GO:GO:0016787GO:GO:0019538GO:GO:0030176GO:GO:0045047EnsemblPlantsGene:Os12g0438900
EnsemblPlants:Os12t0438900-01PFAM:PF06645PANTHER:PTHR13202InterPro:SPC12TMHMM:TMhelixUniParc:UPI000393BDBF
SEG:seg:::::
Description
Similar to Microsomal signal peptidase 12 kDa subunit family protein. (Os12t0438900-01)
Coordinates
chr12:-:14503051..14503903
Molecular Weight (calculated)
15198.8 Da
IEP (calculated)
10.833
GRAVY (calculated)
0.042
Length
140 amino acids
Sequence
(BLAST)
001: TASGTLLPVD AAAAHSEQIR SITPPRRRPL LRLLPLPPPA ESPKMDWQGQ KLAEMLMQLL LVASAVAAFV VGYAMADFQL MLLVYAGGVV LTALVTVPNW
101: PFFNRHPLKW LDAAEADRHP RPQVSATPST VGKKKAGKNK
Best Arabidopsis Sequence Match ( AT4G40042.1 )
(BLAST)
1: MDWQGQKLAE QLMQILLLIA AVVSFVVGYT TASFRMMMLI YAGGVVLTTL ITIPNWPCFN RHHLKWLDPS EAEKHPKPQV VVVSSKKKSS SKK
Arabidopsis Description
At4g40042 [Source:UniProtKB/TrEMBL;Acc:Q84MC9]
SUBAcon: [plasma membrane,golgi,vacuole]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.