Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, plastid, plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 3
- endoplasmic reticulum 3
- extracellular 1
- vacuole 1
- plasma membrane 2
- golgi 1
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
TraesCS3B01G387600.1 | Wheat | golgi | 62.14 | 89.69 |
TraesCS3A01G354600.1 | Wheat | golgi, plasma membrane, vacuole | 62.14 | 89.69 |
HORVU3Hr1G087090.2 | Barley | endoplasmic reticulum | 55.71 | 89.66 |
TraesCS3D01G348600.1 | Wheat | golgi, plasma membrane, vacuole | 61.43 | 88.66 |
Zm00001d013642_P001 | Maize | golgi, plasma membrane, vacuole | 58.57 | 85.42 |
Zm00001d033479_P001 | Maize | extracellular | 51.43 | 83.72 |
EER91131 | Sorghum | golgi, plasma membrane, vacuole | 57.86 | 83.51 |
KRH31466 | Soybean | golgi, plasma membrane | 45.0 | 67.74 |
CDX76926 | Canola | golgi, plasma membrane | 42.86 | 67.42 |
CDX69361 | Canola | golgi, plasma membrane | 43.57 | 67.03 |
Bra038525.1-P | Field mustard | endoplasmic reticulum, golgi | 42.14 | 66.29 |
Bra011812.1-P | Field mustard | golgi, plasma membrane | 42.86 | 65.93 |
CDX75701 | Canola | golgi, plasma membrane | 42.86 | 65.93 |
KRH58761 | Soybean | plasma membrane | 43.57 | 65.59 |
KRH42659 | Soybean | golgi, plasma membrane | 43.57 | 65.59 |
AT2G22425.1 | Thale cress | endoplasmic reticulum, extracellular, golgi | 42.86 | 65.22 |
CDY13762 | Canola | endoplasmic reticulum, golgi | 41.43 | 65.17 |
KRG97437 | Soybean | golgi, plasma membrane | 42.86 | 64.52 |
AT4G40042.1 | Thale cress | golgi, plasma membrane, vacuole | 42.86 | 64.52 |
VIT_01s0010g03360.t01 | Wine grape | golgi, nucleus, plasma membrane | 46.43 | 61.9 |
GSMUA_Achr3P16130_001 | Banana | endoplasmic reticulum, golgi, plasma membrane | 42.14 | 61.46 |
Solyc03g005740.1.1 | Tomato | extracellular, golgi, plasma membrane | 30.71 | 53.75 |
KRH00092 | Soybean | extracellular, plasma membrane, vacuole | 27.14 | 48.72 |
GSMUA_Achr1P13530_001 | Banana | mitochondrion | 45.71 | 46.04 |
GSMUA_Achr8P28280_001 | Banana | golgi, mitochondrion, plasma membrane, plastid | 49.29 | 43.12 |
Protein Annotations
MapMan:18.10.1.1.2 | UniProt:A0A0P0Y9Q3 | ProteinID:BAT16977.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005575 |
GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005783 | GO:GO:0005787 | GO:GO:0006465 |
GO:GO:0006810 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008233 | GO:GO:0009987 | GO:GO:0016020 |
GO:GO:0016021 | GO:GO:0016787 | GO:GO:0019538 | GO:GO:0030176 | GO:GO:0045047 | EnsemblPlantsGene:Os12g0438900 |
EnsemblPlants:Os12t0438900-01 | PFAM:PF06645 | PANTHER:PTHR13202 | InterPro:SPC12 | TMHMM:TMhelix | UniParc:UPI000393BDBF |
SEG:seg | : | : | : | : | : |
Description
Similar to Microsomal signal peptidase 12 kDa subunit family protein. (Os12t0438900-01)
Coordinates
chr12:-:14503051..14503903
Molecular Weight (calculated)
15198.8 Da
IEP (calculated)
10.833
GRAVY (calculated)
0.042
Length
140 amino acids
Sequence
(BLAST)
(BLAST)
001: TASGTLLPVD AAAAHSEQIR SITPPRRRPL LRLLPLPPPA ESPKMDWQGQ KLAEMLMQLL LVASAVAAFV VGYAMADFQL MLLVYAGGVV LTALVTVPNW
101: PFFNRHPLKW LDAAEADRHP RPQVSATPST VGKKKAGKNK
101: PFFNRHPLKW LDAAEADRHP RPQVSATPST VGKKKAGKNK
1: MDWQGQKLAE QLMQILLLIA AVVSFVVGYT TASFRMMMLI YAGGVVLTTL ITIPNWPCFN RHHLKWLDPS EAEKHPKPQV VVVSSKKKSS SKK
Arabidopsis Description
At4g40042 [Source:UniProtKB/TrEMBL;Acc:Q84MC9]
SUBAcon: [plasma membrane,golgi,vacuole]
SUBAcon: [plasma membrane,golgi,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.