Factsheet for VIT_01s0010g03360.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, golgi, nucleus

Predictor Summary:

nucleus 2
endoplasmic reticulum 3
golgi 2
extracellular 1
vacuole 1
plasma membrane 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, nucleus, plasma membrane
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	endoplasmic reticulum
MultiLoc:	golgi
Plant-mPloc:	endoplasmic reticulum
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_06s0080g00970.t01
VIT_10s0003g01830.t01
VIT_15s0048g00220.t01
VIT_19s0015g01790.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G40042.1	VIT_15s0048g00220.t01	AT3G60600.1	21798944
AT4G40042.1	VIT_10s0003g01830.t01	AT4G19030.1	21798944
AT4G40042.1	VIT_19s0015g01790.t01	AT4G26455.1	21798944
AT4G40042.1	VIT_06s0080g00970.t01	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra011812.1-P	Field mustard	golgi, plasma membrane	63.81	73.63
CDX69361	Canola	golgi, plasma membrane	63.81	73.63
CDX75701	Canola	golgi, plasma membrane	63.81	73.63
KRH58761	Soybean	plasma membrane	64.76	73.12
KRH42659	Soybean	golgi, plasma membrane	64.76	73.12
AT4G40042.1	Thale cress	golgi, plasma membrane, vacuole	62.86	70.97
KRG97437	Soybean	golgi, plasma membrane	61.9	69.89
KRH31466	Soybean	golgi, plasma membrane	61.9	69.89
AT2G22425.1	Thale cress	endoplasmic reticulum, extracellular, golgi	59.05	67.39
CDX76926	Canola	golgi, plasma membrane	56.19	66.29
CDY13762	Canola	endoplasmic reticulum, golgi	56.19	66.29
Bra038525.1-P	Field mustard	endoplasmic reticulum, golgi	55.24	65.17
TraesCS3D01G348600.1	Wheat	golgi, plasma membrane, vacuole	60.0	64.95
TraesCS3A01G354600.1	Wheat	golgi, plasma membrane, vacuole	59.05	63.92
TraesCS3B01G387600.1	Wheat	golgi	59.05	63.92
Solyc03g005740.1.1	Tomato	extracellular, golgi, plasma membrane	47.62	62.5
EER91131	Sorghum	golgi, plasma membrane, vacuole	57.14	61.86
GSMUA_Achr3P16130_001	Banana	endoplasmic reticulum, golgi, plasma membrane	56.19	61.46
Zm00001d013642_P001	Maize	golgi, plasma membrane, vacuole	56.19	61.46
HORVU3Hr1G087090.2	Barley	endoplasmic reticulum	50.48	60.92
Zm00001d033479_P001	Maize	extracellular	47.62	58.14
KRH00092	Soybean	extracellular, plasma membrane, vacuole	38.1	51.28
Os12t0438900-01	Rice	endoplasmic reticulum, plasma membrane, plastid	61.9	46.43
GSMUA_Achr1P13530_001	Banana	mitochondrion	56.19	42.45
GSMUA_Achr8P28280_001	Banana	golgi, mitochondrion, plasma membrane, plastid	60.95	40.0

Protein Annotations

EntrezGene:100252350	wikigene:100252350	MapMan:18.10.1.1.2	ProteinID:CBI27628	ProteinID:CBI27628.3	UniProt:D7TAV5
EMBL:FN595754	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005783	GO:GO:0005787	GO:GO:0006465	GO:GO:0006810	GO:GO:0008150
GO:GO:0008152	GO:GO:0008233	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787
GO:GO:0019538	GO:GO:0030176	GO:GO:0045047	EntrezGene:LOC100252350	wikigene:LOC100252350	PFAM:PF06645
PANTHER:PTHR13202	InterPro:SPC12	TMHMM:TMhelix	UniParc:UPI0001BE3193	ArrayExpress:VIT_01s0010g03360	EnsemblPlantsGene:VIT_01s0010g03360
EnsemblPlants:VIT_01s0010g03360.t01	RefSeq:XP_002279312	RefSeq:XP_002279312.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr1:-:20699748..20702024

Molecular Weight (calculated)

12036.8 Da

IEP (calculated)

10.177

GRAVY (calculated)

-0.240

Length

105 amino acids

Sequence
(BLAST)

001: MSEENFLREK ENTIMDWQGQ KLAEQLMQTL LLAFAVVAFV AGYSLGSFQM MLLIYAGGVA LTTLITVPNW PFFNRHPLKW LDSSEVDRHP KPQPVKSKKK
101: PTKQK

Best Arabidopsis Sequence Match ( AT4G40042.1 )
(BLAST)

1: MDWQGQKLAE QLMQILLLIA AVVSFVVGYT TASFRMMMLI YAGGVVLTTL ITIPNWPCFN RHHLKWLDPS EAEKHPKPQV VVVSSKKKSS SKK

Arabidopsis Description

At4g40042 [Source:UniProtKB/TrEMBL;Acc:Q84MC9]
SUBAcon: [plasma membrane,golgi,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.