Factsheet for HORVU3Hr1G087090.2

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

extracellular 4
endoplasmic reticulum 5
vacuole 3
plasma membrane 3
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
TargetP:	secretory
WoLF PSORT:	endoplasmic reticulum
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU2Hr1G081800.3
HORVU2Hr1G091830.4
HORVU5Hr1G071910.1
HORVU6Hr1G060760.3
HORVU7Hr1G048940.3
HORVU7Hr1G071270.2
HORVU7Hr1G088900.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G40042.1	HORVU2Hr1G091830.4	AT3G60600.1	21798944
AT4G40042.1	HORVU6Hr1G060760.3	AT3G60600.1	21798944
AT4G40042.1	HORVU7Hr1G071270.2	AT3G60600.1	21798944
AT4G40042.1	HORVU7Hr1G088900.1	AT4G19030.1	21798944
AT4G40042.1	HORVU2Hr1G081800.3	AT4G26455.1	21798944
AT4G40042.1	HORVU5Hr1G071910.1	AT4G26455.1	21798944
AT4G40042.1	HORVU7Hr1G048940.3	AT4G26455.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G387600.1	Wheat	golgi	100.0	89.69
TraesCS3A01G354600.1	Wheat	golgi, plasma membrane, vacuole	100.0	89.69
TraesCS3D01G348600.1	Wheat	golgi, plasma membrane, vacuole	98.85	88.66
Zm00001d033479_P001	Maize	extracellular	85.06	86.05
Zm00001d013642_P001	Maize	golgi, plasma membrane, vacuole	86.21	78.12
EER91131	Sorghum	golgi, plasma membrane, vacuole	82.76	74.23
KRH31466	Soybean	golgi, plasma membrane	60.92	56.99
Os12t0438900-01	Rice	endoplasmic reticulum, plasma membrane, plastid	89.66	55.71
CDX76926	Canola	golgi, plasma membrane	56.32	55.06
KRG97437	Soybean	golgi, plasma membrane	58.62	54.84
AT2G22425.1	Thale cress	endoplasmic reticulum, extracellular, golgi	57.47	54.35
Bra038525.1-P	Field mustard	endoplasmic reticulum, golgi	55.17	53.93
CDX69361	Canola	golgi, plasma membrane	56.32	53.85
KRH42659	Soybean	golgi, plasma membrane	57.47	53.76
Solyc03g005740.1.1	Tomato	extracellular, golgi, plasma membrane	49.43	53.75
CDY13762	Canola	endoplasmic reticulum, golgi	54.02	52.81
CDX75701	Canola	golgi, plasma membrane	55.17	52.75
Bra011812.1-P	Field mustard	golgi, plasma membrane	55.17	52.75
KRH58761	Soybean	plasma membrane	56.32	52.69
GSMUA_Achr3P16130_001	Banana	endoplasmic reticulum, golgi, plasma membrane	57.47	52.08
AT4G40042.1	Thale cress	golgi, plasma membrane, vacuole	55.17	51.61
VIT_01s0010g03360.t01	Wine grape	golgi, nucleus, plasma membrane	60.92	50.48
KRH00092	Soybean	extracellular, plasma membrane, vacuole	33.33	37.18
GSMUA_Achr1P13530_001	Banana	mitochondrion	58.62	36.69
GSMUA_Achr8P28280_001	Banana	golgi, mitochondrion, plasma membrane, plastid	66.67	36.25

Protein Annotations

MapMan:18.10.1.1.2	UniProt:A0A287M3R0	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0005787	GO:GO:0006465	GO:GO:0008150
GO:GO:0008152	GO:GO:0008233	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787
GO:GO:0019538	EnsemblPlantsGene:HORVU3Hr1G087090	EnsemblPlants:HORVU3Hr1G087090.2	PFAM:PF06645	PANTHER:PTHR13202	InterPro:SPC12
TMHMM:TMhelix	UniParc:UPI000B46202A	SEG:seg	:	:	:

Description

No Description!

Coordinates

chrchr3H:-:619839619..619841398

Molecular Weight (calculated)

9409.7 Da

IEP (calculated)

10.631

GRAVY (calculated)

0.295

Length

87 amino acids

Sequence
(BLAST)

1: MLMQVLLVAS AVAAFLVGYA MADFQLMLLV YAGGVVLTAL VTVPNWPFFN RHPLKWLDAA EADRHPRPQI SSAPATTGGK KKTGKNK

Best Arabidopsis Sequence Match ( AT4G40042.1 )
(BLAST)

1: MDWQGQKLAE QLMQILLLIA AVVSFVVGYT TASFRMMMLI YAGGVVLTTL ITIPNWPCFN RHHLKWLDPS EAEKHPKPQV VVVSSKKKSS SKK

Arabidopsis Description

At4g40042 [Source:UniProtKB/TrEMBL;Acc:Q84MC9]
SUBAcon: [plasma membrane,golgi,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.