Factsheet for GSMUA_Achr1P13530_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
golgi 2
endoplasmic reticulum 2
extracellular 1
vacuole 1
plasma membrane 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	plastid
MultiLoc:	golgi
Plant-mPloc:	endoplasmic reticulum
Predotar:	plastid
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr1P20280_001
GSMUA_Achr3P04120_001
GSMUA_Achr4P01630_001
GSMUA_Achr4P10230_001
GSMUA_Achr5P20880_001
GSMUA_Achr8P11120_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G40042.1	GSMUA_Achr11P...	AT3G60600.1	21798944
AT4G40042.1	GSMUA_Achr11P...	AT3G60600.1	21798944
AT4G40042.1	GSMUA_Achr1P20280_001	AT3G60600.1	21798944
AT4G40042.1	GSMUA_Achr5P20880_001	AT3G60600.1	21798944
AT4G40042.1	GSMUA_Achr8P11120_001	AT3G60600.1	21798944
AT4G40042.1	GSMUA_Achr4P10230_001	AT4G19030.1	21798944
AT4G40042.1	GSMUA_Achr10P...	AT4G26455.1	21798944
AT4G40042.1	GSMUA_Achr3P04120_001	AT4G26455.1	21798944
AT4G40042.1	GSMUA_Achr4P01630_001	AT4G26455.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P16130_001	Banana	endoplasmic reticulum, golgi, plasma membrane	48.92	70.83
CDX69361	Canola	golgi, plasma membrane	45.32	69.23
Bra011812.1-P	Field mustard	golgi, plasma membrane	44.6	68.13
CDX75701	Canola	golgi, plasma membrane	44.6	68.13
AT4G40042.1	Thale cress	golgi, plasma membrane, vacuole	44.6	66.67
AT2G22425.1	Thale cress	endoplasmic reticulum, extracellular, golgi	43.88	66.3
CDY13762	Canola	endoplasmic reticulum, golgi	41.01	64.04
KRG97437	Soybean	golgi, plasma membrane	42.45	63.44
CDX76926	Canola	golgi, plasma membrane	40.29	62.92
Bra038525.1-P	Field mustard	endoplasmic reticulum, golgi	40.29	62.92
Zm00001d013642_P001	Maize	golgi, plasma membrane, vacuole	43.17	62.5
KRH31466	Soybean	golgi, plasma membrane	41.73	62.37
TraesCS3B01G387600.1	Wheat	golgi	43.17	61.86
TraesCS3A01G354600.1	Wheat	golgi, plasma membrane, vacuole	43.17	61.86
KRH42659	Soybean	golgi, plasma membrane	41.01	61.29
TraesCS3D01G348600.1	Wheat	golgi, plasma membrane, vacuole	42.45	60.82
KRH58761	Soybean	plasma membrane	40.29	60.22
Solyc03g005740.1.1	Tomato	extracellular, golgi, plasma membrane	33.81	58.75
HORVU3Hr1G087090.2	Barley	endoplasmic reticulum	36.69	58.62
EER91131	Sorghum	golgi, plasma membrane, vacuole	40.29	57.73
Zm00001d033479_P001	Maize	extracellular	35.25	56.98
VIT_01s0010g03360.t01	Wine grape	golgi, nucleus, plasma membrane	42.45	56.19
GSMUA_Achr8P28280_001	Banana	golgi, mitochondrion, plasma membrane, plastid	61.87	53.75
Os12t0438900-01	Rice	endoplasmic reticulum, plasma membrane, plastid	46.04	45.71
KRH00092	Soybean	extracellular, plasma membrane, vacuole	23.74	42.31

Protein Annotations

MapMan:18.10.1.1.2	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005783	GO:GO:0005787	GO:GO:0006465	GO:GO:0008150	GO:GO:0008152
GO:GO:0008233	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	GO:GO:0019538
EnsemblPlantsGene:GSMUA_Achr1G13530_001	EnsemblPlants:GSMUA_Achr1P13530_001	EnsemblPlants:GSMUA_Achr1T13530_001	UniProt:M0RZL1	PFAM:PF06645	PANTHER:PTHR13202
PANTHER:PTHR13202:SF2	InterPro:SPC12	TMHMM:TMhelix	UniParc:UPI0002949A45	SEG:seg	:

Description

Probable signal peptidase complex subunit 1 [Source:GMGC_GENE;Acc:GSMUA_Achr1G13530_001]

Coordinates

chr1:+:10318863..10319661

Molecular Weight (calculated)

15363.8 Da

IEP (calculated)

10.983

GRAVY (calculated)

-0.021

Length

139 amino acids

Sequence
(BLAST)

001: MERLETTCIR LGLRSSITSP ARATADERGF ARFARVSFFS LRSAQMDWQG QKGAEIVMQI MLVVFAIAGL GTGYTIGSFP TMMLTFAGGV VLTALITVPN
101: WPFFNRHPLK WLDPSEAERH PKPQVDVAAA SKKKAPKHK

Best Arabidopsis Sequence Match ( AT2G22425.2 )
(BLAST)

1: MDWQGQKLVE QLMQILLVIS GVVAVVVGYT TESFRTMMLI YAGGVVLTTL VTVPNWPFYN LHPLKWLDPS EAEKHPKPEV VSVASKKKFS KK

Arabidopsis Description

Probable signal peptidase complex subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:Q944J0]
SUBAcon: [endoplasmic reticulum,golgi,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.