CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
endoplasmic reticulum 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER96942
EES02290
EES05123
EES12559
EES14314
EES14570
EES19830
KXG31128
OQU78405
OQU81760
OQU85551

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G58170.1	EES02290	AT3G16310.1	21798944
AT3G58170.1	EES19830	AT3G16310.1	21798944
AT3G58170.1	EES12559	AT3G60600.1	21798944
AT3G58170.1	EES14570	AT3G60600.1	21798944
AT3G58170.1	KXG31128	AT3G60600.1	21798944
AT3G58170.1	EER96942	AT4G26455.1	21798944
AT3G58170.1	EES14314	AT4G26455.1	21798944
AT3G58170.1	OQU81760	AT4G26455.1	21798944
AT3G58170.1	OQU78405	AT5G66480.1	21798944
AT3G58170.1	OQU85551	AT5G66480.1	21798944
AT4G14455.1	EES05123	AT1G27300.1	21798944
AT4G14455.1	EES02290	AT3G16310.1	21798944
AT4G14455.1	EES19830	AT3G16310.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d018507_P002	Maize	mitochondrion	90.08	97.52
Os02t0820700-02	Rice	cytosol	87.02	93.44
TraesCS6D01G383300.1	Wheat	cytosol	80.92	87.6
TraesCS6A01G399100.1	Wheat	cytosol	80.15	86.78
TraesCS6B01G439400.1	Wheat	cytosol	80.15	86.78
Solyc06g008520.2.1	Tomato	cytosol	76.34	85.47
PGSC0003DMT400028259	Potato	cytosol	78.63	84.43
AT3G58170.1	Thale cress	cytosol	73.28	78.69
EES14052	Sorghum	cytosol	73.28	78.69
VIT_07s0005g02990.t01	Wine grape	cytosol	73.28	78.05
GSMUA_Achr2P04090_001	Banana	cytosol	72.52	77.87
CDX71964	Canola	cytosol	71.76	77.05
CDX98275	Canola	cytosol	69.47	73.39
VIT_05s0051g00940.t01	Wine grape	cytosol	67.94	72.95
CDY06050	Canola	mitochondrion	70.23	69.7
Bra007383.1-P	Field mustard	cytosol	70.23	69.7
CDX67725	Canola	cytosol	69.47	66.91
Bra003325.1-P	Field mustard	cytosol	52.67	58.97
PGSC0003DMT400044453	Potato	cytosol	58.02	57.14
AT4G14455.1	Thale cress	cytosol, mitochondrion	55.73	56.15
CDY47151	Canola	cytosol	55.73	55.3
Bra039859.1-P	Field mustard	cytosol	55.73	55.3
HORVU6Hr1G091720.2	Barley	cytosol, plastid	61.07	55.17
KRG95641	Soybean	cytosol, mitochondrion, nucleus	32.06	53.85
Solyc09g089630.2.1	Tomato	cytosol	59.54	53.79
PGSC0003DMT400080700	Potato	cytosol	73.28	51.34
CDY12469	Canola	plastid	55.73	39.89
GSMUA_AchrUn_...	Banana	cytosol, endoplasmic reticulum, plastid	73.28	39.02

Protein Annotations

Gene3D:1.20.5.110	MapMan:22.7.4.4	UniProt:A0A194YT81	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:IPR000727	EnsemblPlants:KXG31387	ProteinID:KXG31387	ProteinID:KXG31387.1	PFscan:PS50192	PANTHER:PTHR12791
PANTHER:PTHR12791:SF38	SMART:SM00397	EnsemblPlantsGene:SORBI_3004G349100	SUPFAM:SSF58038	TMHMM:TMhelix	InterPro:T_SNARE_dom
UniParc:UPI000220729D	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr4:+:67783620..67787268

Molecular Weight (calculated)

15008.8 Da

IEP (calculated)

6.264

GRAVY (calculated)

-0.492

Length

131 amino acids

Sequence
(BLAST)

001: MNPRGYRSNR TSLFDGIEEG GIRATSYSSH EIDEQENDRA IDGLQDRVSI LKRLSGDIHE EVETHNRMLD RMGNDMDASR GFLSGTVDKF KMVFETKSSR
101: RMGTLVASFV ALFLLVYYLT RCRIYLENSL S

Best Arabidopsis Sequence Match ( AT3G58170.1 )
(BLAST)

001: MNPRREPRGG RSSLFDGIEE GGIRAASSYS HEINEHENER ALEGLQDRVI LLKRLSGDIN EEVDTHNRML DRMGNDMDSS RGFLSGTMDR FKTVFETKSS
101: RRMLTLVASF VGLFLVIYYL TR

Arabidopsis Description

BET11Bet1-like SNARE 1-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9M2J9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.