Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, plastid, cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 2
- mitochondrion 2
- endoplasmic reticulum 2
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr10P... | |
| GSMUA_Achr11P... | |
| GSMUA_Achr11P... | |
| GSMUA_Achr1P12060_001 | |
| GSMUA_Achr1P20280_001 | |
| GSMUA_Achr2P22980_001 | |
| GSMUA_Achr3P04120_001 | |
| GSMUA_Achr4P01630_001 | |
| GSMUA_Achr4P08270_001 | |
| GSMUA_Achr4P15460_001 | |
| GSMUA_Achr5P20880_001 | |
| GSMUA_Achr6P08980_001 | |
| GSMUA_Achr6P14800_001 | |
| GSMUA_Achr8P11120_001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G58170.1 | GSMUA_Achr4P08270_001 | AT3G16310.1 | 21798944 |
| AT3G58170.1 | GSMUA_Achr4P15460_001 | AT3G16310.1 | 21798944 |
| AT3G58170.1 | GSMUA_Achr6P14800_001 | AT3G16310.1 | 21798944 |
| AT3G58170.1 | GSMUA_Achr11P... | AT3G60600.1 | 21798944 |
| AT3G58170.1 | GSMUA_Achr11P... | AT3G60600.1 | 21798944 |
| AT3G58170.1 | GSMUA_Achr1P20280_001 | AT3G60600.1 | 21798944 |
| AT3G58170.1 | GSMUA_Achr5P20880_001 | AT3G60600.1 | 21798944 |
| AT3G58170.1 | GSMUA_Achr8P11120_001 | AT3G60600.1 | 21798944 |
| AT3G58170.1 | GSMUA_Achr10P... | AT4G26455.1 | 21798944 |
| AT3G58170.1 | GSMUA_Achr3P04120_001 | AT4G26455.1 | 21798944 |
| AT3G58170.1 | GSMUA_Achr4P01630_001 | AT4G26455.1 | 21798944 |
| AT3G58170.1 | GSMUA_Achr1P12060_001 | AT5G66480.1 | 21798944 |
| AT3G58170.1 | GSMUA_Achr2P22980_001 | AT5G66480.1 | 21798944 |
| AT3G58170.1 | GSMUA_Achr6P08980_001 | AT5G66480.1 | 21798944 |
| AT4G14455.1 | GSMUA_Achr4P08270_001 | AT3G16310.1 | 21798944 |
| AT4G14455.1 | GSMUA_Achr4P15460_001 | AT3G16310.1 | 21798944 |
| AT4G14455.1 | GSMUA_Achr6P14800_001 | AT3G16310.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr2P04090_001 | Banana | cytosol | 45.12 | 90.98 |
| VIT_07s0005g02990.t01 | Wine grape | cytosol | 40.65 | 81.3 |
| TraesCS6D01G383300.1 | Wheat | cytosol | 39.02 | 79.34 |
| Os02t0820700-02 | Rice | cytosol | 39.02 | 78.69 |
| EES14052 | Sorghum | cytosol | 39.02 | 78.69 |
| TraesCS6A01G399100.1 | Wheat | cytosol | 38.62 | 78.51 |
| Zm00001d018507_P002 | Maize | mitochondrion | 38.62 | 78.51 |
| Solyc06g008520.2.1 | Tomato | cytosol | 36.99 | 77.78 |
| TraesCS6B01G439400.1 | Wheat | cytosol | 38.21 | 77.69 |
| PGSC0003DMT400028259 | Potato | cytosol | 38.21 | 77.05 |
| Zm00001d031883_P001 | Maize | cytosol | 38.21 | 77.05 |
| VIT_05s0051g00940.t01 | Wine grape | cytosol | 37.4 | 75.41 |
| KXG31387 | Sorghum | cytosol | 39.02 | 73.28 |
| AT3G58170.1 | Thale cress | cytosol | 36.18 | 72.95 |
| CDX71964 | Canola | cytosol | 36.18 | 72.95 |
| GSMUA_Achr11P... | Banana | cytosol | 35.77 | 72.73 |
| CDX98275 | Canola | cytosol | 36.59 | 72.58 |
| Os08t0563300-01 | Rice | cytosol | 35.37 | 71.9 |
| CDY06050 | Canola | mitochondrion | 35.77 | 66.67 |
| Bra007383.1-P | Field mustard | cytosol | 35.37 | 65.91 |
| CDX67725 | Canola | cytosol | 36.18 | 65.44 |
| Bra003325.1-P | Field mustard | cytosol | 28.05 | 58.97 |
| PGSC0003DMT400044453 | Potato | cytosol | 31.71 | 58.65 |
| AT4G14455.1 | Thale cress | cytosol, mitochondrion | 30.89 | 58.46 |
| CDY47151 | Canola | cytosol | 31.3 | 58.33 |
| Bra039859.1-P | Field mustard | cytosol | 31.3 | 58.33 |
| KRG95641 | Soybean | cytosol, mitochondrion, nucleus | 17.48 | 55.13 |
| HORVU6Hr1G091720.2 | Barley | cytosol, plastid | 31.71 | 53.79 |
| Solyc09g089630.2.1 | Tomato | cytosol | 31.3 | 53.1 |
| PGSC0003DMT400080700 | Potato | cytosol | 39.43 | 51.87 |
| GSMUA_Achr5P19560_001 | Banana | endoplasmic reticulum, extracellular | 19.51 | 44.44 |
| CDY12469 | Canola | plastid | 32.11 | 43.17 |
Protein Annotations
| EnsemblPlants:GSMUA_AchrUn_randomP08780_001 | EnsemblPlants:GSMUA_AchrUn_randomT08780_001 | EnsemblPlantsGene:GSMUA_AchrUn_randomG08780_001 | Gene3D:1.20.5.110 | GO:GO:0005575 | GO:GO:0016020 |
| GO:GO:0016021 | InterPro:IPR000727 | InterPro:T_SNARE_dom | PANTHER:PTHR12791 | PANTHER:PTHR12791:SF38 | PFscan:PS50192 |
| SEG:seg | SUPFAM:SSF58038 | TMHMM:TMhelix | UniParc:UPI000295BCA3 | UniProt:M0U7I8 | MapMan:22.7.4.4 |
Description
Bet1-like SNARE 1-1 [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG08780_001]
Coordinates
chrchrUn_random:+:40240743..40244424
Molecular Weight (calculated)
27935.7 Da
IEP (calculated)
8.154
GRAVY (calculated)
-0.259
Length
246 amino acids
Sequence
(BLAST)
(BLAST)
001: MNGDITFVLR LPSIALQVRP NTHRKHQDAR STPSTGFRCL LIDPKLQYRP SCILEFNFLK LLRHTGKVHQ KDSLGKAVDF FSEVSAPMNS RRDYHSNRTA
101: LFDGIEEGGV RASAYSSHEI DEHDNDLAME GLQDRVNILK RCNGLPRSLC LTGDIHEEVE SHNRMLDRMG NDMDSSRGIL SGTMDRFKMV FETKSSCRMA
201: TLVASFVALF LLVYFLTKWV APELSGQLLP VGLLNFVIQQ WCFNKP
101: LFDGIEEGGV RASAYSSHEI DEHDNDLAME GLQDRVNILK RCNGLPRSLC LTGDIHEEVE SHNRMLDRMG NDMDSSRGIL SGTMDRFKMV FETKSSCRMA
201: TLVASFVALF LLVYFLTKWV APELSGQLLP VGLLNFVIQQ WCFNKP
001: MNPRREPRGG RSSLFDGIEE GGIRAASSYS HEINEHENER ALEGLQDRVI LLKRLSGDIN EEVDTHNRML DRMGNDMDSS RGFLSGTMDR FKTVFETKSS
101: RRMLTLVASF VGLFLVIYYL TR
101: RRMLTLVASF VGLFLVIYYL TR
Arabidopsis Description
BET11Bet1-like SNARE 1-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9M2J9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.