Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, extracellular
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- endoplasmic reticulum 3
- golgi 3
- extracellular 3
- vacuole 2
- plasma membrane 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr11P... | Banana | cytosol | 53.7 | 47.93 |
| GSMUA_Achr2P04090_001 | Banana | cytosol | 44.44 | 39.34 |
| Solyc06g008520.2.1 | Tomato | cytosol | 42.59 | 39.32 |
| PGSC0003DMT400028259 | Potato | cytosol | 43.52 | 38.52 |
| AT3G58170.1 | Thale cress | cytosol | 41.67 | 36.89 |
| CDX98275 | Canola | cytosol | 41.67 | 36.29 |
| VIT_05s0051g00940.t01 | Wine grape | cytosol | 40.74 | 36.07 |
| CDX71964 | Canola | cytosol | 40.74 | 36.07 |
| VIT_07s0005g02990.t01 | Wine grape | cytosol | 40.74 | 35.77 |
| CDX67725 | Canola | cytosol | 41.67 | 33.09 |
| Bra007383.1-P | Field mustard | cytosol | 39.81 | 32.58 |
| CDY06050 | Canola | mitochondrion | 39.81 | 32.58 |
| PGSC0003DMT400044453 | Potato | cytosol | 37.96 | 30.83 |
| AT4G14455.1 | Thale cress | cytosol, mitochondrion | 35.19 | 29.23 |
| CDY47151 | Canola | cytosol | 35.19 | 28.79 |
| Bra039859.1-P | Field mustard | cytosol | 35.19 | 28.79 |
| Solyc09g089630.2.1 | Tomato | cytosol | 37.96 | 28.28 |
| PGSC0003DMT400080700 | Potato | cytosol | 41.67 | 24.06 |
| Bra003325.1-P | Field mustard | cytosol | 25.93 | 23.93 |
| CDY12469 | Canola | plastid | 35.19 | 20.77 |
| GSMUA_AchrUn_... | Banana | cytosol, endoplasmic reticulum, plastid | 44.44 | 19.51 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr5P19560_001 | EnsemblPlants:GSMUA_Achr5T19560_001 | EnsemblPlantsGene:GSMUA_Achr5G19560_001 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| PANTHER:PTHR12791 | PANTHER:PTHR12791:SF38 | TMHMM:TMhelix | UniParc:UPI000296C170 | UniProt:M0SZY5 | MapMan:22.7.4.4 |
Description
Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr5G19560_001]
Coordinates
chr5:-:21199627..21201445
Molecular Weight (calculated)
12568.9 Da
IEP (calculated)
8.909
GRAVY (calculated)
0.360
Length
108 amino acids
Sequence
(BLAST)
(BLAST)
001: MFNLTACRES IETTELLCLI ALRRVAFRPH LNRLMKLLSM TKINILMEVE IHNHALDQMG HDMDTSSGVL SGTVDRFKMV FERKLNCRMA TLVISFLVLF
101: LLMYYLTK
101: LLMYYLTK
001: MNPRREPRGG RSSLFDGIEE GGIRAASSYS HEINEHENER ALEGLQDRVI LLKRLSGDIN EEVDTHNRML DRMGNDMDSS RGFLSGTMDR FKTVFETKSS
101: RRMLTLVASF VGLFLVIYYL TR
101: RRMLTLVASF VGLFLVIYYL TR
Arabidopsis Description
BET11Bet1-like SNARE 1-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9M2J9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.