Factsheet for Solyc06g008520.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
endoplasmic reticulum 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g085000.2.1
Solyc03g120880.2.1
Solyc07g066170.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G58170.1	Solyc03g120880.2.1	AT3G16310.1	21798944
AT3G58170.1	Solyc07g066170.2.1	AT4G26455.1	21798944
AT3G58170.1	Solyc02g085000.2.1	AT5G66480.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400028259	Potato	cytosol	99.15	95.08
Zm00001d018507_P002	Maize	mitochondrion	84.62	81.82
Os02t0820700-02	Rice	cytosol	84.62	81.15
TraesCS6D01G383300.1	Wheat	cytosol	82.91	80.17
TraesCS6B01G439400.1	Wheat	cytosol	82.91	80.17
KRH32152	Soybean	endoplasmic reticulum	86.32	80.16
KRH19526	Soybean	cytosol, endoplasmic reticulum	86.32	80.16
VIT_07s0005g02990.t01	Wine grape	cytosol	83.76	79.67
AT3G58170.1	Thale cress	cytosol	82.91	79.51
TraesCS6A01G399100.1	Wheat	cytosol	82.05	79.34
KRH67336	Soybean	cytosol, endoplasmic reticulum	84.62	79.2
CDX71964	Canola	cytosol	82.05	78.69
CDX98275	Canola	cytosol	82.91	78.23
VIT_05s0051g00940.t01	Wine grape	cytosol	80.34	77.05
KXG31387	Sorghum	cytosol	85.47	76.34
GSMUA_Achr2P04090_001	Banana	cytosol	78.63	75.41
Zm00001d031883_P001	Maize	cytosol	75.21	72.13
EES14052	Sorghum	cytosol	75.21	72.13
CDY06050	Canola	mitochondrion	81.2	71.97
Bra007383.1-P	Field mustard	cytosol	81.2	71.97
CDX67725	Canola	cytosol	81.2	69.85
Os08t0563300-01	Rice	cytosol	71.79	69.42
GSMUA_Achr11P...	Banana	cytosol	71.79	69.42
Bra003325.1-P	Field mustard	cytosol	61.54	61.54
Solyc09g089630.2.1	Tomato	cytosol	66.67	53.79
HORVU6Hr1G091720.2	Barley	cytosol, plastid	62.39	50.34
GSMUA_Achr5P19560_001	Banana	endoplasmic reticulum, extracellular	39.32	42.59
GSMUA_AchrUn_...	Banana	cytosol, endoplasmic reticulum, plastid	77.78	36.99

Protein Annotations

EnsemblPlants:Solyc06g008520.2.1	EnsemblPlantsGene:Solyc06g008520.2	Gene3D:1.20.5.110	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005886	GO:GO:0016020	GO:GO:0016021	InterPro:IPR000727	InterPro:T_SNARE_dom
PANTHER:PTHR12791	PANTHER:PTHR12791:SF38	PFscan:PS50192	SEG:seg	SMART:SM00397	SUPFAM:SSF58038
TMHMM:TMhelix	UniParc:UPI000276672A	UniProt:K4C3N2	MapMan:22.7.4.4	:	:

Description

Bet1-like SNARE 1-1 [Source:Projected from Arabidopsis thaliana (AT3G58170) UniProtKB/Swiss-Prot;Acc:Q9M2J9]

Coordinates

chr6:+:2406671..2410266

Molecular Weight (calculated)

13406.9 Da

IEP (calculated)

5.684

GRAVY (calculated)

-0.413

Length

117 amino acids

Sequence
(BLAST)

001: MNSRRAALFD GIEEGGIRAS SSYSSHEIDE QENERAIDGL QDRVSFLKKL SGDIHEEVDT HNRMLDRMGN DMDSSRGVLS GTMDKFRMVF ETKSSRRMFT
101: LVASFVVLFL VVYYLTR

Best Arabidopsis Sequence Match ( AT3G58170.1 )
(BLAST)

001: MNPRREPRGG RSSLFDGIEE GGIRAASSYS HEINEHENER ALEGLQDRVI LLKRLSGDIN EEVDTHNRML DRMGNDMDSS RGFLSGTMDR FKTVFETKSS
101: RRMLTLVASF VGLFLVIYYL TR

Arabidopsis Description

BET11Bet1-like SNARE 1-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9M2J9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.