CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 1
cytosol 4
endoplasmic reticulum 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH08190
KRH09922
KRH23409
KRH28715
KRH56393
KRH62532
KRH65384
KRH69884
KRH76164
KRH76747

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G58170.1	KRH09922	AT3G16310.1	21798944
AT3G58170.1	KRH23409	AT3G16310.1	21798944
AT3G58170.1	KRH65384	AT3G60600.1	21798944
AT3G58170.1	KRH76164	AT3G60600.1	21798944
AT3G58170.1	KRH56393	AT4G26455.1	21798944
AT3G58170.1	KRH62532	AT4G26455.1	21798944
AT3G58170.1	KRH08190	AT5G66480.1	21798944
AT3G58170.1	KRH28715	AT5G66480.1	21798944
AT3G58170.1	KRH69884	AT5G66480.1	21798944
AT3G58170.1	KRH76747	AT5G66480.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH19526	Soybean	cytosol, endoplasmic reticulum	99.21	99.21
KRH67336	Soybean	cytosol, endoplasmic reticulum	93.65	94.4
Solyc06g008520.2.1	Tomato	cytosol	80.16	86.32
VIT_07s0005g02990.t01	Wine grape	cytosol	84.13	86.18
PGSC0003DMT400028259	Potato	cytosol	83.33	86.07
AT3G58170.1	Thale cress	cytosol	79.37	81.97
CDX71964	Canola	cytosol	78.57	81.15
CDX98275	Canola	cytosol	79.37	80.65
VIT_05s0051g00940.t01	Wine grape	cytosol	76.98	79.51
CDY06050	Canola	mitochondrion	77.78	74.24
Bra007383.1-P	Field mustard	cytosol	76.98	73.48
CDX67725	Canola	cytosol	76.98	71.32
KRG95641	Soybean	cytosol, mitochondrion, nucleus	42.86	69.23
Bra003325.1-P	Field mustard	cytosol	60.32	64.96
KRH31727	Soybean	cytosol	60.32	57.14
KRG90380	Soybean	cytosol	57.94	54.89
PGSC0003DMT400080700	Potato	cytosol	80.16	54.01

Protein Annotations

Gene3D:1.20.5.110	EntrezGene:100500028	MapMan:22.7.4.4	EMBL:ACUP02006096	EMBL:BT090583	UniProt:C6SZI2
EnsemblPlantsGene:GLYMA_10G034800	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	InterPro:IPR000727	ProteinID:KRH32151.1
EnsemblPlants:KRH32152	ProteinID:KRH32152	ProteinID:KRH32152.1	PFscan:PS50192	PANTHER:PTHR12791	PANTHER:PTHR12791:SF38
SMART:SM00397	SUPFAM:SSF58038	TMHMM:TMhelix	InterPro:T_SNARE_dom	UniParc:UPI0001B150B6	SEG:seg

Description

hypothetical protein

Coordinates

chr10:-:3032154..3035186

Molecular Weight (calculated)

14356.0 Da

IEP (calculated)

5.688

GRAVY (calculated)

-0.492

Length

126 amino acids

Sequence
(BLAST)

001: MNARRDGRNN RVALFDGIEE GGIRASSLYS SSSSHEIDEH DNEQALDGLQ DRVNLLKRLS GDINEEVDSH NRMLDRMGND MDSSRGVLSG TMDKFKMVFE
101: TKSSRRMFSL VASFVVLFLI IYYLTR

Best Arabidopsis Sequence Match ( AT3G58170.1 )
(BLAST)

001: MNPRREPRGG RSSLFDGIEE GGIRAASSYS HEINEHENER ALEGLQDRVI LLKRLSGDIN EEVDTHNRML DRMGNDMDSS RGFLSGTMDR FKTVFETKSS
101: RRMLTLVASF VGLFLVIYYL TR

Arabidopsis Description

BET11Bet1-like SNARE 1-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9M2J9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.