Factsheet for PGSC0003DMT400080700

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
endoplasmic reticulum 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400006495
PGSC0003DMT400009054
PGSC0003DMT400022426
PGSC0003DMT400056956

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G58170.1	PGSC0003DMT400006495	AT3G16310.1	21798944
AT3G58170.1	PGSC0003DMT400022426	AT4G26455.1	21798944
AT3G58170.1	PGSC0003DMT400056956	AT4G26455.1	21798944
AT3G58170.1	PGSC0003DMT400009054	AT5G66480.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400028259	Potato	cytosol	57.75	88.52
KRH67336	Soybean	cytosol, endoplasmic reticulum	54.01	80.8
KRH32152	Soybean	endoplasmic reticulum	54.01	80.16
KRH19526	Soybean	cytosol, endoplasmic reticulum	54.01	80.16
Zm00001d018507_P002	Maize	mitochondrion	51.34	79.34
AT3G58170.1	Thale cress	cytosol	51.34	78.69
CDX98275	Canola	cytosol	51.87	78.23
VIT_07s0005g02990.t01	Wine grape	cytosol	51.34	78.05
CDX71964	Canola	cytosol	50.8	77.87
TraesCS6D01G383300.1	Wheat	cytosol	50.27	77.69
Os02t0820700-02	Rice	cytosol	50.27	77.05
TraesCS6B01G439400.1	Wheat	cytosol	49.73	76.86
TraesCS6A01G399100.1	Wheat	cytosol	49.73	76.86
VIT_05s0051g00940.t01	Wine grape	cytosol	49.2	75.41
GSMUA_Achr2P04090_001	Banana	cytosol	48.13	73.77
KXG31387	Sorghum	cytosol	51.34	73.28
CDX67725	Canola	cytosol	52.41	72.06
CDY06050	Canola	mitochondrion	50.27	71.21
Bra007383.1-P	Field mustard	cytosol	50.27	71.21
EES14052	Sorghum	cytosol	45.45	69.67
Zm00001d031883_P001	Maize	cytosol	44.92	68.85
GSMUA_Achr11P...	Banana	cytosol	44.38	68.59
Os08t0563300-01	Rice	cytosol	43.85	67.77
Bra003325.1-P	Field mustard	cytosol	41.18	65.81
PGSC0003DMT400044453	Potato	cytosol	41.71	58.65
HORVU6Hr1G091720.2	Barley	cytosol, plastid	40.11	51.72
GSMUA_Achr5P19560_001	Banana	endoplasmic reticulum, extracellular	24.06	41.67
GSMUA_AchrUn_...	Banana	cytosol, endoplasmic reticulum, plastid	51.87	39.43

Protein Annotations

EnsemblPlants:PGSC0003DMT400080700	EnsemblPlantsGene:PGSC0003DMG400031428	Gene3D:1.20.5.110	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:IPR000727	InterPro:T_SNARE_dom	PANTHER:PTHR12791	PANTHER:PTHR12791:SF38	PFscan:PS50192	PGSC:PGSC0003DMG400031428
SEG:seg	SMART:SM00397	SUPFAM:SSF58038	TMHMM:TMhelix	UniParc:UPI0002950558	UniProt:M1D3V1
MapMan:22.7.4.4	:	:	:	:	:

Description

Bet1-like snare 1-1 [Source:PGSC_GENE;Acc:PGSC0003DMG400031428]

Coordinates

chr9:-:49675693..49679397

Molecular Weight (calculated)

21981.3 Da

IEP (calculated)

5.762

GRAVY (calculated)

-0.568

Length

187 amino acids

Sequence
(BLAST)

001: MERRPIEVKG RTKQHDRDTC KIRVRFVQED KREERDARLG RIWWAAGCWV LNWINLLEFL VFPLEEEERV ERSNRAALFD GIEEGGIRAS SSYASHEMDE
101: QENEKAMDGL QDRVNLLKRL SGDIHEEVDT HNRMLDRMGN DMDSSRGVLS GTMDKFKMVF ETKSSQRMFT LVASFVVLFL VVYFLTR

Best Arabidopsis Sequence Match ( AT3G58170.1 )
(BLAST)

001: MNPRREPRGG RSSLFDGIEE GGIRAASSYS HEINEHENER ALEGLQDRVI LLKRLSGDIN EEVDTHNRML DRMGNDMDSS RGFLSGTMDR FKTVFETKSS
101: RRMLTLVASF VGLFLVIYYL TR

Arabidopsis Description

BET11Bet1-like SNARE 1-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9M2J9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.