Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT3G58170.1 | Thale cress | cytosol | 98.36 | 98.36 |
| CDX98275 | Canola | cytosol | 94.26 | 92.74 |
| CDY06050 | Canola | mitochondrion | 98.36 | 90.91 |
| CDX67725 | Canola | cytosol | 93.44 | 83.82 |
| PGSC0003DMT400028259 | Potato | cytosol | 82.79 | 82.79 |
| Solyc06g008520.2.1 | Tomato | cytosol | 78.69 | 82.05 |
| VIT_07s0005g02990.t01 | Wine grape | cytosol | 80.33 | 79.67 |
| KRH67336 | Soybean | cytosol, endoplasmic reticulum | 81.15 | 79.2 |
| KRH19526 | Soybean | cytosol, endoplasmic reticulum | 81.15 | 78.57 |
| KRH32152 | Soybean | endoplasmic reticulum | 81.15 | 78.57 |
| TraesCS6D01G383300.1 | Wheat | cytosol | 77.87 | 78.51 |
| TraesCS6B01G439400.1 | Wheat | cytosol | 77.87 | 78.51 |
| TraesCS6A01G399100.1 | Wheat | cytosol | 77.05 | 77.69 |
| Zm00001d018507_P002 | Maize | mitochondrion | 76.23 | 76.86 |
| VIT_05s0051g00940.t01 | Wine grape | cytosol | 75.41 | 75.41 |
| Os02t0820700-02 | Rice | cytosol | 75.41 | 75.41 |
| GSMUA_Achr2P04090_001 | Banana | cytosol | 75.41 | 75.41 |
| KXG31387 | Sorghum | cytosol | 77.05 | 71.76 |
| Zm00001d031883_P001 | Maize | cytosol | 71.31 | 71.31 |
| EES14052 | Sorghum | cytosol | 70.49 | 70.49 |
| Os08t0563300-01 | Rice | cytosol | 68.03 | 68.59 |
| GSMUA_Achr11P... | Banana | cytosol | 66.39 | 66.94 |
| CDY47151 | Canola | cytosol | 63.11 | 58.33 |
| PGSC0003DMT400080700 | Potato | cytosol | 77.87 | 50.8 |
| HORVU6Hr1G091720.2 | Barley | cytosol, plastid | 59.84 | 50.34 |
| CDY12469 | Canola | plastid | 63.11 | 42.08 |
| GSMUA_Achr5P19560_001 | Banana | endoplasmic reticulum, extracellular | 36.07 | 40.74 |
| GSMUA_AchrUn_... | Banana | cytosol, endoplasmic reticulum, plastid | 72.95 | 36.18 |
Protein Annotations
| EnsemblPlants:CDX71964 | EnsemblPlantsGene:GSBRNA2T00155727001 | Gene3D:1.20.5.110 | GO:A0A078C724 | InterPro:IPR000727 | InterPro:T_SNARE_dom |
| PANTHER:PTHR12791 | PANTHER:PTHR12791:SF38 | PFscan:PS50192 | ProteinID:CDX71964 | ProteinID:CDX71964.1 | SUPFAM:SSF58038 |
| TMHMM:TMhelix | UniParc:UPI0004EBEE2B | MapMan:22.7.4.4 | : | : | : |
Description
BnaC08g29100D
Coordinates
chrLK031795:+:1535686..1537357
Molecular Weight (calculated)
13925.6 Da
IEP (calculated)
6.810
GRAVY (calculated)
-0.541
Length
122 amino acids
Sequence
(BLAST)
(BLAST)
001: MNPRREPRGG RSSLFDGIEE GGIRAASSYS HEINEHENER ALEGLQDRVI LLKRLSGDIN EEVDTHNRML DRMGNDMDSS RGILSGTMDR FKTVFETKSS
101: RRMLTLVASF VGVFLVIYYL TR
101: RRMLTLVASF VGVFLVIYYL TR
001: MNPRREPRGG RSSLFDGIEE GGIRAASSYS HEINEHENER ALEGLQDRVI LLKRLSGDIN EEVDTHNRML DRMGNDMDSS RGFLSGTMDR FKTVFETKSS
101: RRMLTLVASF VGLFLVIYYL TR
101: RRMLTLVASF VGLFLVIYYL TR
Arabidopsis Description
BET11Bet1-like SNARE 1-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9M2J9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.