CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 3
endoplasmic reticulum 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX84933
CDX97739
CDY03907
CDY15722
CDY27605
CDY30157

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G14455.1	CDX84933	AT1G27300.1	21798944
AT4G14455.1	CDY03907	AT1G27300.1	21798944
AT4G14455.1	CDY15722	AT1G27300.1	21798944
AT4G14455.1	CDY27605	AT1G27300.1	21798944
AT4G14455.1	CDX97739	AT3G16310.1	21798944
AT4G14455.1	CDY30157	AT3G16310.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra039859.1-P	Field mustard	cytosol	100.0	100.0
AT4G14455.1	Thale cress	cytosol, mitochondrion	91.67	93.08
CDY12469	Canola	plastid	100.0	72.13
KRH31727	Soybean	cytosol	68.18	67.67
KRG90380	Soybean	cytosol	68.18	67.67
PGSC0003DMT400044453	Potato	cytosol	65.91	65.41
GSMUA_Achr2P04090_001	Banana	cytosol	59.09	63.93
CDX71964	Canola	cytosol	58.33	63.11
Os02t0820700-02	Rice	cytosol	56.82	61.48
CDX98275	Canola	cytosol	57.58	61.29
Solyc09g089630.2.1	Tomato	cytosol	66.67	60.69
Zm00001d018507_P002	Maize	mitochondrion	55.3	60.33
TraesCS6D01G383300.1	Wheat	cytosol	53.79	58.68
TraesCS6B01G439400.1	Wheat	cytosol	53.79	58.68
CDY06050	Canola	mitochondrion	58.33	58.33
TraesCS6A01G399100.1	Wheat	cytosol	53.03	57.85
Zm00001d031883_P001	Maize	cytosol	52.27	56.56
EES14052	Sorghum	cytosol	51.52	55.74
KXG31387	Sorghum	cytosol	55.3	55.73
Os08t0563300-01	Rice	cytosol	50.0	54.55
GSMUA_Achr11P...	Banana	cytosol	49.24	53.72
CDX67725	Canola	cytosol	55.3	53.68
HORVU6Hr1G091720.2	Barley	cytosol, plastid	43.18	39.31
GSMUA_Achr5P19560_001	Banana	endoplasmic reticulum, extracellular	28.79	35.19
GSMUA_AchrUn_...	Banana	cytosol, endoplasmic reticulum, plastid	58.33	31.3

Protein Annotations

EnsemblPlants:CDY47151	EnsemblPlantsGene:GSBRNA2T00086817001	Gene3D:1.20.5.110	GO:A0A078IBD6	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	InterPro:IPR000727	InterPro:T_SNARE_dom	PANTHER:PTHR12791	PANTHER:PTHR12791:SF36	PFscan:PS50192
ProteinID:CDY47151	ProteinID:CDY47151.1	SEG:seg	SUPFAM:SSF58038	TMHMM:TMhelix	UniParc:UPI0002545831
UniProt:A0A078IBD6	MapMan:22.7.4.4	:	:	:	:

Description

BnaA08g05320DBnaA08g05320D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IBD6]

Coordinates

chrLK032699:-:99197..100721

Molecular Weight (calculated)

15392.5 Da

IEP (calculated)

9.642

GRAVY (calculated)

-0.589

Length

132 amino acids

Sequence
(BLAST)

001: MNYRRENRAS RTSLFDGLDG LEEGRLRASS SYSHDTTERD NDEALESLQD RVSFLKRVTG DIHEEVESHN RMLDKVGNKM DSARGIMSGT INRFKLVFEK
101: KSNRKTCKLI GYFVLLFLVM YYLIRLLNYI KG

Best Arabidopsis Sequence Match ( AT4G14455.1 )
(BLAST)

001: MNFRRENRAS RTSLFDGLDG LEEGRLRASS SYAHDERDND EALENLQDRV SFLKRVTGDI HEEVENHNRL LDKVGNKMDS ARGIMSGTIN RFKLVFEKKS
101: NRKSCKLIAY FVLLFLIMYY LIRLLNYIKG

Arabidopsis Description

BET12At4g14455 [Source:UniProtKB/TrEMBL;Acc:Q147J7]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.