CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	golgi
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX67837
CDX71796
CDX89063
CDX89333
CDX94330
CDX97739
CDY18608
CDY30157
CDY41153
CDY48365

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G58170.1	CDX97739	AT3G16310.1	21798944
AT3G58170.1	CDY30157	AT3G16310.1	21798944
AT3G58170.1	CDX67837	AT3G60600.1	21798944
AT3G58170.1	CDX71796	AT3G60600.1	21798944
AT3G58170.1	CDX89063	AT3G60600.1	21798944
AT3G58170.1	CDY41153	AT3G60600.1	21798944
AT3G58170.1	CDY48365	AT3G60600.1	21798944
AT3G58170.1	CDX89333	AT4G26455.1	21798944
AT3G58170.1	CDX94330	AT4G26455.1	21798944
AT3G58170.1	CDY18608	AT5G66480.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX71964	Canola	cytosol	92.74	94.26
AT3G58170.1	Thale cress	cytosol	92.74	94.26
CDY06050	Canola	mitochondrion	91.94	86.36
CDX67725	Canola	cytosol	92.74	84.56
Solyc06g008520.2.1	Tomato	cytosol	78.23	82.91
PGSC0003DMT400028259	Potato	cytosol	81.45	82.79
TraesCS6D01G383300.1	Wheat	cytosol	78.23	80.17
TraesCS6B01G439400.1	Wheat	cytosol	78.23	80.17
VIT_07s0005g02990.t01	Wine grape	cytosol	79.03	79.67
KRH32152	Soybean	endoplasmic reticulum	80.65	79.37
KRH19526	Soybean	cytosol, endoplasmic reticulum	80.65	79.37
TraesCS6A01G399100.1	Wheat	cytosol	77.42	79.34
KRH67336	Soybean	cytosol, endoplasmic reticulum	79.03	78.4
GSMUA_Achr2P04090_001	Banana	cytosol	75.0	76.23
VIT_05s0051g00940.t01	Wine grape	cytosol	74.19	75.41
Zm00001d018507_P002	Maize	mitochondrion	72.58	74.38
Os02t0820700-02	Rice	cytosol	72.58	73.77
Zm00001d031883_P001	Maize	cytosol	68.55	69.67
KXG31387	Sorghum	cytosol	73.39	69.47
EES14052	Sorghum	cytosol	67.74	68.85
Os08t0563300-01	Rice	cytosol	65.32	66.94
GSMUA_Achr11P...	Banana	cytosol	64.52	66.12
CDY47151	Canola	cytosol	61.29	57.58
PGSC0003DMT400080700	Potato	cytosol	78.23	51.87
HORVU6Hr1G091720.2	Barley	cytosol, plastid	59.68	51.03
GSMUA_Achr5P19560_001	Banana	endoplasmic reticulum, extracellular	36.29	41.67
CDY12469	Canola	plastid	61.29	41.53
GSMUA_AchrUn_...	Banana	cytosol, endoplasmic reticulum, plastid	72.58	36.59

Protein Annotations

EnsemblPlants:CDX98275	EnsemblPlantsGene:GSBRNA2T00105802001	Gene3D:1.20.5.110	GO:A0A078E840	InterPro:IPR000727	InterPro:T_SNARE_dom
PANTHER:PTHR12791	PANTHER:PTHR12791:SF38	PFscan:PS50192	ProteinID:CDX98275	ProteinID:CDX98275.1	SMART:SM00397
SUPFAM:SSF58038	TMHMM:TMhelix	UniParc:UPI0004EE66C7	MapMan:22.7.4.4	:	:

Description

BnaC06g16360D

Coordinates

chrLK031904:-:268058..269333

Molecular Weight (calculated)

14017.7 Da

IEP (calculated)

6.263

GRAVY (calculated)

-0.385

Length

124 amino acids

Sequence
(BLAST)

001: MLCREPRGGR SALFDGIEEG GIRAASSSSY TSHEINEHEN ERALEGLQDR VILLKRLSGD INEEVDAHNR MLDRMGNDMD SSRGILSGTM DRFKTVFETK
101: SSRRMLTLVA SFVGLFLVIY YLTR

Best Arabidopsis Sequence Match ( AT3G58170.1 )
(BLAST)

001: MNPRREPRGG RSSLFDGIEE GGIRAASSYS HEINEHENER ALEGLQDRVI LLKRLSGDIN EEVDTHNRML DRMGNDMDSS RGFLSGTMDR FKTVFETKSS
101: RRMLTLVASF VGLFLVIYYL TR

Arabidopsis Description

BET11Bet1-like SNARE 1-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9M2J9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.