CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, cytosol

Predictor Summary:

nucleus 1
cytosol 4
endoplasmic reticulum 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 27224218

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH08190
KRH09922
KRH23409
KRH28715
KRH56393
KRH62532
KRH65384
KRH69884
KRH76164
KRH76747

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G58170.1	KRH09922	AT3G16310.1	21798944
AT3G58170.1	KRH23409	AT3G16310.1	21798944
AT3G58170.1	KRH65384	AT3G60600.1	21798944
AT3G58170.1	KRH76164	AT3G60600.1	21798944
AT3G58170.1	KRH56393	AT4G26455.1	21798944
AT3G58170.1	KRH62532	AT4G26455.1	21798944
AT3G58170.1	KRH08190	AT5G66480.1	21798944
AT3G58170.1	KRH28715	AT5G66480.1	21798944
AT3G58170.1	KRH69884	AT5G66480.1	21798944
AT3G58170.1	KRH76747	AT5G66480.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH19526	Soybean	cytosol, endoplasmic reticulum	94.4	93.65
KRH32152	Soybean	endoplasmic reticulum	94.4	93.65
Solyc06g008520.2.1	Tomato	cytosol	79.2	84.62
VIT_07s0005g02990.t01	Wine grape	cytosol	83.2	84.55
PGSC0003DMT400028259	Potato	cytosol	82.4	84.43
AT3G58170.1	Thale cress	cytosol	80.0	81.97
CDX71964	Canola	cytosol	79.2	81.15
CDX98275	Canola	cytosol	78.4	79.03
VIT_05s0051g00940.t01	Wine grape	cytosol	76.0	77.87
CDY06050	Canola	mitochondrion	78.4	74.24
Bra007383.1-P	Field mustard	cytosol	77.6	73.48
KRG95641	Soybean	cytosol, mitochondrion, nucleus	45.6	73.08
CDX67725	Canola	cytosol	76.0	69.85
Bra003325.1-P	Field mustard	cytosol	60.0	64.1
KRH31727	Soybean	cytosol	60.8	57.14
KRG90380	Soybean	cytosol	58.4	54.89
PGSC0003DMT400080700	Potato	cytosol	80.8	54.01

Protein Annotations

EMBL:ACUP02002053	EnsemblPlants:KRH67336	EnsemblPlantsGene:GLYMA_03G161000	EntrezGene:100814836	Gene3D:1.20.5.110	GO:GO:0005575
GO:GO:0016020	GO:GO:0016021	InterPro:IPR000727	InterPro:T_SNARE_dom	PANTHER:PTHR12791	PANTHER:PTHR12791:SF38
PFscan:PS50192	ProteinID:KRH67336	ProteinID:KRH67336.1	SMART:SM00397	SUPFAM:SSF58038	TMHMM:TMhelix
UniParc:UPI000233A4B4	UniProt:I1JP17	MapMan:22.7.4.4	:	:	:

Description

hypothetical protein

Coordinates

chr3:-:37611676..37615371

Molecular Weight (calculated)

14417.0 Da

IEP (calculated)

5.215

GRAVY (calculated)

-0.549

Length

125 amino acids

Sequence
(BLAST)

001: MNARRDNRNN RVSLFDGIEE GGIRASSVYS SSHEIDEHDN EQALDGLQDR VNLLKRLSGD INEEVDSHNR MLDRMGNDMD SSRGVLSGTM DKFKMVFETK
101: SNQRMFTLVA SFVVLFLIIY YLTRY

Best Arabidopsis Sequence Match ( AT3G58170.1 )
(BLAST)

001: MNPRREPRGG RSSLFDGIEE GGIRAASSYS HEINEHENER ALEGLQDRVI LLKRLSGDIN EEVDTHNRML DRMGNDMDSS RGFLSGTMDR FKTVFETKSS
101: RRMLTLVASF VGLFLVIYYL TR

Arabidopsis Description

BET11Bet1-like SNARE 1-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9M2J9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.