Factsheet for VIT_07s0005g02990.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 4
endoplasmic reticulum 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_04s0023g02110.t01
VIT_09s0002g03770.t01
VIT_15s0048g00220.t01
VIT_19s0015g01790.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G58170.1	VIT_09s0002g03770.t01	AT3G16310.1	21798944
AT3G58170.1	VIT_15s0048g00220.t01	AT3G60600.1	21798944
AT3G58170.1	VIT_19s0015g01790.t01	AT4G26455.1	21798944
AT3G58170.1	VIT_04s0023g02110.t01	AT5G66480.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_05s0051g00940.t01	Wine grape	cytosol	88.62	89.34
PGSC0003DMT400028259	Potato	cytosol	83.74	84.43
KRH19526	Soybean	cytosol, endoplasmic reticulum	86.18	84.13
KRH32152	Soybean	endoplasmic reticulum	86.18	84.13
Solyc06g008520.2.1	Tomato	cytosol	79.67	83.76
KRH67336	Soybean	cytosol, endoplasmic reticulum	84.55	83.2
GSMUA_Achr2P04090_001	Banana	cytosol	82.11	82.79
CDX71964	Canola	cytosol	79.67	80.33
AT3G58170.1	Thale cress	cytosol	78.86	79.51
CDX98275	Canola	cytosol	79.67	79.03
TraesCS6D01G383300.1	Wheat	cytosol	76.42	77.69
TraesCS6B01G439400.1	Wheat	cytosol	76.42	77.69
Zm00001d018507_P002	Maize	mitochondrion	75.61	76.86
TraesCS6A01G399100.1	Wheat	cytosol	75.61	76.86
Os02t0820700-02	Rice	cytosol	75.61	76.23
GSMUA_Achr11P...	Banana	cytosol	74.8	76.03
Zm00001d031883_P001	Maize	cytosol	74.8	75.41
EES14052	Sorghum	cytosol	74.8	75.41
CDY06050	Canola	mitochondrion	78.86	73.48
KXG31387	Sorghum	cytosol	78.05	73.28
Os08t0563300-01	Rice	cytosol	71.54	72.73
Bra007383.1-P	Field mustard	cytosol	78.05	72.73
CDX67725	Canola	cytosol	77.24	69.85
Bra003325.1-P	Field mustard	cytosol	60.16	63.25
PGSC0003DMT400080700	Potato	cytosol	78.05	51.34
HORVU6Hr1G091720.2	Barley	cytosol, plastid	59.35	50.34
GSMUA_Achr5P19560_001	Banana	endoplasmic reticulum, extracellular	35.77	40.74
GSMUA_AchrUn_...	Banana	cytosol, endoplasmic reticulum, plastid	81.3	40.65

Protein Annotations

Gene3D:1.20.5.110	EntrezGene:100266980	wikigene:100266980	MapMan:22.7.4.4	ProteinID:CBI37085	ProteinID:CBI37085.3
UniProt:D7U2W9	EMBL:FN596502	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	InterPro:IPR000727
EntrezGene:LOC100266980	wikigene:LOC100266980	PFscan:PS50192	PANTHER:PTHR12791	PANTHER:PTHR12791:SF38	SUPFAM:SSF58038
TIGR:TC60440	TMHMM:TMhelix	InterPro:T_SNARE_dom	UniParc:UPI00015CCFA9	ArrayExpress:VIT_07s0005g02990	EnsemblPlantsGene:VIT_07s0005g02990
EnsemblPlants:VIT_07s0005g02990.t01	unigene:Vvi.11311	RefSeq:XP_002262985	RefSeq:XP_002262985.1	:	:

Description

No Description!

Coordinates

chr7:-:5798742..5813148

Molecular Weight (calculated)

14248.9 Da

IEP (calculated)

6.522

GRAVY (calculated)

-0.485

Length

123 amino acids

Sequence
(BLAST)

001: MNSRRDYRGN RIALFDGIEE GGIRASSSYS SHEIDEHDNE RAVDGLQDRV NLLKRLTGDI HEEVESHNRM LDRVGNDMDA SRGILSGTMD RFKMVFETRS
101: SRRMFTLVAS FVVIFLIIYY LTR

Best Arabidopsis Sequence Match ( AT3G58170.1 )
(BLAST)

001: MNPRREPRGG RSSLFDGIEE GGIRAASSYS HEINEHENER ALEGLQDRVI LLKRLSGDIN EEVDTHNRML DRMGNDMDSS RGFLSGTMDR FKTVFETKSS
101: RRMLTLVASF VGLFLVIYYL TR

Arabidopsis Description

BET11Bet1-like SNARE 1-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9M2J9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.