CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 3
vacuole 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion, plastid, vacuole
BaCelLo:	plastid
MultiLoc:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	vacuole
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX67837
CDX71796
CDX89063
CDX89333
CDX94330
CDX97739
CDY18608
CDY30157
CDY41153
CDY48365

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G58170.1	CDX97739	AT3G16310.1	21798944
AT3G58170.1	CDY30157	AT3G16310.1	21798944
AT3G58170.1	CDX67837	AT3G60600.1	21798944
AT3G58170.1	CDX71796	AT3G60600.1	21798944
AT3G58170.1	CDX89063	AT3G60600.1	21798944
AT3G58170.1	CDY41153	AT3G60600.1	21798944
AT3G58170.1	CDY48365	AT3G60600.1	21798944
AT3G58170.1	CDX89333	AT4G26455.1	21798944
AT3G58170.1	CDX94330	AT4G26455.1	21798944
AT3G58170.1	CDY18608	AT5G66480.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX71964	Canola	cytosol	90.91	98.36
AT3G58170.1	Thale cress	cytosol	89.39	96.72
Bra007383.1-P	Field mustard	cytosol	96.21	96.21
CDX98275	Canola	cytosol	86.36	91.94
CDX67725	Canola	cytosol	86.36	83.82
PGSC0003DMT400028259	Potato	cytosol	75.76	81.97
Solyc06g008520.2.1	Tomato	cytosol	71.97	81.2
VIT_07s0005g02990.t01	Wine grape	cytosol	73.48	78.86
KRH67336	Soybean	cytosol, endoplasmic reticulum	74.24	78.4
KRH32152	Soybean	endoplasmic reticulum	74.24	77.78
KRH19526	Soybean	cytosol, endoplasmic reticulum	74.24	77.78
TraesCS6B01G439400.1	Wheat	cytosol	71.21	77.69
TraesCS6D01G383300.1	Wheat	cytosol	71.21	77.69
TraesCS6A01G399100.1	Wheat	cytosol	70.45	76.86
Zm00001d018507_P002	Maize	mitochondrion	68.94	75.21
GSMUA_Achr2P04090_001	Banana	cytosol	68.94	74.59
Os02t0820700-02	Rice	cytosol	68.94	74.59
VIT_05s0051g00940.t01	Wine grape	cytosol	68.94	74.59
Zm00001d031883_P001	Maize	cytosol	65.15	70.49
KXG31387	Sorghum	cytosol	69.7	70.23
EES14052	Sorghum	cytosol	64.39	69.67
Os08t0563300-01	Rice	cytosol	62.12	67.77
GSMUA_Achr11P...	Banana	cytosol	61.36	66.94
CDY47151	Canola	cytosol	58.33	58.33
HORVU6Hr1G091720.2	Barley	cytosol, plastid	55.3	50.34
PGSC0003DMT400080700	Potato	cytosol	71.21	50.27
CDY12469	Canola	plastid	58.33	42.08
GSMUA_Achr5P19560_001	Banana	endoplasmic reticulum, extracellular	32.58	39.81
GSMUA_AchrUn_...	Banana	cytosol, endoplasmic reticulum, plastid	66.67	35.77

Protein Annotations

EnsemblPlants:CDY06050	EnsemblPlantsGene:GSBRNA2T00121907001	Gene3D:1.20.5.110	GO:A0A078EVL0	InterPro:IPR000727	InterPro:T_SNARE_dom
PANTHER:PTHR12791	PANTHER:PTHR12791:SF38	PFscan:PS50192	ProteinID:CDY06050	ProteinID:CDY06050.1	SUPFAM:SSF58038
TMHMM:TMhelix	UniParc:UPI0004EED442	MapMan:22.7.4.4	:	:	:

Description

BnaA09g37300D

Coordinates

chrLK031967:+:474669..476321

Molecular Weight (calculated)

14991.0 Da

IEP (calculated)

6.798

GRAVY (calculated)

-0.315

Length

132 amino acids

Sequence
(BLAST)

001: MNTRSLPCGF VLLFREPRGG RSSLFDGIEE GGIRAASSYS HEINEHENER ALEGLQDRVI LLKRLSGDIN EEVDTHNRML DRMGNDMDSS RGILSGTMDR
101: FKTVFETKSS RRMLTLVAAF VGVFLVIYYL TR

Best Arabidopsis Sequence Match ( AT3G58170.1 )
(BLAST)

001: MNPRREPRGG RSSLFDGIEE GGIRAASSYS HEINEHENER ALEGLQDRVI LLKRLSGDIN EEVDTHNRML DRMGNDMDSS RGFLSGTMDR FKTVFETKSS
101: RRMLTLVASF VGLFLVIYYL TR

Arabidopsis Description

BET11Bet1-like SNARE 1-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9M2J9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.