Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G383300.1 | Wheat | cytosol | 98.35 | 98.35 |
| TraesCS6A01G399100.1 | Wheat | cytosol | 97.52 | 97.52 |
| Zm00001d018507_P002 | Maize | mitochondrion | 85.95 | 85.95 |
| Os02t0820700-02 | Rice | cytosol | 85.95 | 85.25 |
| Solyc06g008520.2.1 | Tomato | cytosol | 80.17 | 82.91 |
| PGSC0003DMT400028259 | Potato | cytosol | 81.82 | 81.15 |
| KXG31387 | Sorghum | cytosol | 86.78 | 80.15 |
| AT3G58170.1 | Thale cress | cytosol | 80.17 | 79.51 |
| CDX98275 | Canola | cytosol | 80.17 | 78.23 |
| CDX71964 | Canola | cytosol | 78.51 | 77.87 |
| VIT_07s0005g02990.t01 | Wine grape | cytosol | 77.69 | 76.42 |
| GSMUA_Achr2P04090_001 | Banana | cytosol | 76.86 | 76.23 |
| VIT_05s0051g00940.t01 | Wine grape | cytosol | 71.9 | 71.31 |
| CDY06050 | Canola | mitochondrion | 77.69 | 71.21 |
| Bra007383.1-P | Field mustard | cytosol | 77.69 | 71.21 |
| CDX67725 | Canola | cytosol | 77.69 | 69.12 |
| HORVU6Hr1G091720.2 | Barley | cytosol, plastid | 75.21 | 62.76 |
| Bra003325.1-P | Field mustard | cytosol | 60.33 | 62.39 |
| PGSC0003DMT400044453 | Potato | cytosol | 61.16 | 55.64 |
| KRG95641 | Soybean | cytosol, mitochondrion, nucleus | 35.54 | 55.13 |
| AT4G14455.1 | Thale cress | cytosol, mitochondrion | 58.68 | 54.62 |
| CDY47151 | Canola | cytosol | 58.68 | 53.79 |
| Bra039859.1-P | Field mustard | cytosol | 58.68 | 53.79 |
| Solyc09g089630.2.1 | Tomato | cytosol | 60.33 | 50.34 |
| PGSC0003DMT400080700 | Potato | cytosol | 76.86 | 49.73 |
| CDY12469 | Canola | plastid | 58.68 | 38.8 |
| GSMUA_AchrUn_... | Banana | cytosol, endoplasmic reticulum, plastid | 77.69 | 38.21 |
Protein Annotations
| EnsemblPlants:TraesCS6B01G439400.1 | EnsemblPlantsGene:TraesCS6B01G439400 | Gene3D:1.20.5.110 | InterPro:IPR000727 | InterPro:T_SNARE_dom | PANTHER:PTHR12791 |
| PANTHER:PTHR12791:SF38 | PFscan:PS50192 | SMART:SM00397 | SUPFAM:SSF58038 | TIGR:cd15853 | TMHMM:TMhelix |
| MapMan:22.7.4.4 | : | : | : | : | : |
Description
No Description!
Coordinates
chr6B:+:704882414..704885861
Molecular Weight (calculated)
13688.2 Da
IEP (calculated)
6.265
GRAVY (calculated)
-0.441
Length
121 amino acids
Sequence
(BLAST)
(BLAST)
001: MNARGFRSTR TALFDGIEEG GIRASAYSSH EIDEHENERA VDGLQDRVSI LKRISGDINE EVEAHNRMLD RMGNDMDSSR GFLSGTVDKF KTVFETKSSR
101: RMGTLVASFV ALFMLVYYLT R
101: RMGTLVASFV ALFMLVYYLT R
001: MNPRREPRGG RSSLFDGIEE GGIRAASSYS HEINEHENER ALEGLQDRVI LLKRLSGDIN EEVDTHNRML DRMGNDMDSS RGFLSGTMDR FKTVFETKSS
101: RRMLTLVASF VGLFLVIYYL TR
101: RRMLTLVASF VGLFLVIYYL TR
Arabidopsis Description
BET11Bet1-like SNARE 1-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9M2J9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.