Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 4
- endoplasmic reticulum 1
- mitochondrion 1
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400006495 | |
| PGSC0003DMT400084737 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G14455.1 | PGSC0003DMT400084737 | AT1G27300.1 | 21798944 |
| AT4G14455.1 | PGSC0003DMT400006495 | AT3G16310.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc09g089630.2.1 | Tomato | cytosol | 99.25 | 91.03 |
| PGSC0003DMT400028259 | Potato | cytosol | 61.65 | 67.21 |
| GSMUA_Achr2P04090_001 | Banana | cytosol | 61.65 | 67.21 |
| KRH31727 | Soybean | cytosol | 66.17 | 66.17 |
| KRG90380 | Soybean | cytosol | 66.17 | 66.17 |
| Bra039859.1-P | Field mustard | cytosol | 65.41 | 65.91 |
| CDY47151 | Canola | cytosol | 65.41 | 65.91 |
| AT4G14455.1 | Thale cress | cytosol, mitochondrion | 62.41 | 63.85 |
| Zm00001d031883_P001 | Maize | cytosol | 57.89 | 63.11 |
| EES14052 | Sorghum | cytosol | 57.89 | 63.11 |
| Os08t0563300-01 | Rice | cytosol | 57.14 | 62.81 |
| Zm00001d018507_P002 | Maize | mitochondrion | 57.14 | 62.81 |
| Os02t0820700-02 | Rice | cytosol | 56.39 | 61.48 |
| TraesCS6B01G439400.1 | Wheat | cytosol | 55.64 | 61.16 |
| GSMUA_Achr11P... | Banana | cytosol | 54.89 | 60.33 |
| TraesCS6D01G383300.1 | Wheat | cytosol | 54.89 | 60.33 |
| TraesCS6A01G399100.1 | Wheat | cytosol | 54.14 | 59.5 |
| KXG31387 | Sorghum | cytosol | 57.14 | 58.02 |
| CDY12469 | Canola | plastid | 65.41 | 47.54 |
| PGSC0003DMT400080700 | Potato | cytosol | 58.65 | 41.71 |
| HORVU6Hr1G091720.2 | Barley | cytosol, plastid | 45.11 | 41.38 |
| GSMUA_Achr5P19560_001 | Banana | endoplasmic reticulum, extracellular | 30.83 | 37.96 |
| GSMUA_AchrUn_... | Banana | cytosol, endoplasmic reticulum, plastid | 58.65 | 31.71 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400044453 | EnsemblPlantsGene:PGSC0003DMG400017253 | EntrezGene:102600606 | Gene3D:1.20.5.110 | GO:GO:0005575 | GO:GO:0016020 |
| GO:GO:0016021 | InterPro:IPR000727 | InterPro:T_SNARE_dom | PANTHER:PTHR12791 | PANTHER:PTHR12791:SF36 | PFscan:PS50192 |
| PGSC:PGSC0003DMG400017253 | RefSeq:XP_006354521.1 | SUPFAM:SSF58038 | TMHMM:TMhelix | UniParc:UPI000294CD32 | UniProt:M1BG83 |
| MapMan:22.7.4.4 | : | : | : | : | : |
Description
Bet1-like SNARE 1-2 [Source:PGSC_GENE;Acc:PGSC0003DMG400017253]
Coordinates
chr9:+:55934390..55942515
Molecular Weight (calculated)
15773.9 Da
IEP (calculated)
7.659
GRAVY (calculated)
-0.570
Length
133 amino acids
Sequence
(BLAST)
(BLAST)
001: MSYRRDHRAH RAALFDNYDS IEEGGIRASS SYPRDLDERD NDKAVDSLQD RVSFLKKLTG DIHEEVETHN KMLDRMGNEM DSSRGIMSGT MDRFKMVFEK
101: KSNQKVCKLV GYFVLSFFLI YYIFRFLMYF MYG
101: KSNQKVCKLV GYFVLSFFLI YYIFRFLMYF MYG
001: MNFRRENRAS RTSLFDGLDG LEEGRLRASS SYAHDERDND EALENLQDRV SFLKRVTGDI HEEVENHNRL LDKVGNKMDS ARGIMSGTIN RFKLVFEKKS
101: NRKSCKLIAY FVLLFLIMYY LIRLLNYIKG
101: NRKSCKLIAY FVLLFLIMYY LIRLLNYIKG
Arabidopsis Description
BET12At4g14455 [Source:UniProtKB/TrEMBL;Acc:Q147J7]
SUBAcon: [mitochondrion,cytosol]
SUBAcon: [mitochondrion,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.