Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 3
- golgi 3
- plasma membrane 3
- endoplasmic reticulum 4
- vacuole 3
- cytosol 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra003423.1-P | |
| Bra007547.1-P | |
| Bra014481.1-P | |
| Bra026434.1-P | |
| Bra027174.1-P | |
| Bra037167.1-P |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX67725 | Canola | cytosol | 88.89 | 76.47 |
| AT3G58170.1 | Thale cress | cytosol | 76.07 | 72.95 |
| Bra007383.1-P | Field mustard | cytosol | 76.92 | 68.18 |
| PGSC0003DMT400028259 | Potato | cytosol | 65.81 | 63.11 |
| Solyc06g008520.2.1 | Tomato | cytosol | 61.54 | 61.54 |
| TraesCS6D01G383300.1 | Wheat | cytosol | 62.39 | 60.33 |
| TraesCS6B01G439400.1 | Wheat | cytosol | 62.39 | 60.33 |
| KRH19526 | Soybean | cytosol, endoplasmic reticulum | 64.96 | 60.32 |
| KRH32152 | Soybean | endoplasmic reticulum | 64.96 | 60.32 |
| VIT_07s0005g02990.t01 | Wine grape | cytosol | 63.25 | 60.16 |
| KRH67336 | Soybean | cytosol, endoplasmic reticulum | 64.1 | 60.0 |
| TraesCS6A01G399100.1 | Wheat | cytosol | 61.54 | 59.5 |
| GSMUA_Achr2P04090_001 | Banana | cytosol | 59.83 | 57.38 |
| Zm00001d018507_P002 | Maize | mitochondrion | 58.12 | 56.2 |
| VIT_05s0051g00940.t01 | Wine grape | cytosol | 58.12 | 55.74 |
| Os02t0820700-02 | Rice | cytosol | 58.12 | 55.74 |
| Zm00001d031883_P001 | Maize | cytosol | 55.56 | 53.28 |
| KXG31387 | Sorghum | cytosol | 58.97 | 52.67 |
| EES14052 | Sorghum | cytosol | 54.7 | 52.46 |
| Os08t0563300-01 | Rice | cytosol | 52.99 | 51.24 |
| GSMUA_Achr11P... | Banana | cytosol | 52.14 | 50.41 |
| HORVU6Hr1G091720.2 | Barley | cytosol, plastid | 60.68 | 48.97 |
| Bra039859.1-P | Field mustard | cytosol | 51.28 | 45.45 |
| PGSC0003DMT400080700 | Potato | cytosol | 65.81 | 41.18 |
| GSMUA_AchrUn_... | Banana | cytosol, endoplasmic reticulum, plastid | 58.97 | 28.05 |
| GSMUA_Achr5P19560_001 | Banana | endoplasmic reticulum, extracellular | 23.93 | 25.93 |
Protein Annotations
| EnsemblPlants:Bra003325.1 | EnsemblPlants:Bra003325.1-P | EnsemblPlantsGene:Bra003325 | Gene3D:1.20.5.110 | InterPro:IPR000727 | InterPro:T_SNARE_dom |
| PANTHER:PTHR12791 | PANTHER:PTHR12791:SF38 | PFscan:PS50192 | SMART:SM00397 | SUPFAM:SSF58038 | UniParc:UPI0002541630 |
| UniProt:M4CGJ2 | MapMan:22.7.4.4 | : | : | : | : |
Description
AT3G58170 (E=5e-044) ATBS14A, ATBET11, BET11, BS14A | BS14A (BET1P/SFT1P-LIKE PROTEIN 14A); SNAP receptor/ protein transporter
Coordinates
chrA07:-:12612734..12613483
Molecular Weight (calculated)
13361.9 Da
IEP (calculated)
5.215
GRAVY (calculated)
-0.437
Length
117 amino acids
Sequence
(BLAST)
(BLAST)
001: MFLFLFDFGN RNDLVIVYVL FCREPRGGRS ALFDGIEEGG IRASSYASHE INEHENERAL EGLQDRVILL KRLSGDINEE VDTHNRMLDR MGNDMDSSRG
101: ILSGTMDRFK TVKSPLH
101: ILSGTMDRFK TVKSPLH
001: MNPRREPRGG RSSLFDGIEE GGIRAASSYS HEINEHENER ALEGLQDRVI LLKRLSGDIN EEVDTHNRML DRMGNDMDSS RGFLSGTMDR FKTVFETKSS
101: RRMLTLVASF VGLFLVIYYL TR
101: RRMLTLVASF VGLFLVIYYL TR
Arabidopsis Description
BET11Bet1-like SNARE 1-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9M2J9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.