CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 2
cytosol 3
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os01t0598900-00	Rice	cytosol	80.77	90.46
Os02t0762300-01	Rice	cytosol	89.29	89.53
TraesCS5D01G217500.1	Wheat	mitochondrion	88.46	89.44
TraesCS5A01G214500.1	Wheat	mitochondrion	88.46	89.44
TraesCS5B01G209300.1	Wheat	mitochondrion	88.19	89.17
Solyc08g074590.2.1	Tomato	cytosol	53.02	84.28
Zm00001d018148_P003	Maize	cytosol	92.86	83.46
GSMUA_Achr7P03980_001	Banana	cytosol	55.49	83.13
CDX87632	Canola	cytosol	71.43	81.5
AT2G44270.1	Thale cress	mitochondrion	78.57	80.56
KRH60667	Soybean	cytosol	77.2	79.6
HORVU5Hr1G061960.1	Barley	cytosol	88.46	77.4
CDY17861	Canola	cytosol	73.35	76.95
CDY64359	Canola	cytosol	73.08	76.66
CDX73239	Canola	cytosol	75.27	76.54
Bra015780.1-P	Field mustard	cytosol	77.47	75.81
VIT_18s0001g00440.t01	Wine grape	cytosol	76.37	75.14
HORVU6Hr1G078790.1	Barley	cytosol	18.41	72.83
AT1G76170.7	Thale cress	cytosol	71.43	71.23
Bra004822.1-P	Field mustard	cytosol	78.02	71.18
Solyc08g074580.2.1	Tomato	mitochondrion	24.73	70.31

Protein Annotations

MapMan:16.6.5.1.4.1	Gene3D:3.40.50.620	EntrezGene:8075190	UniProt:C5XST3	InterPro:CTU1_C	EnsemblPlants:EES07570
ProteinID:EES07570	ProteinID:EES07570.1	GO:GO:0000049	GO:GO:0002098	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006139	GO:GO:0006464	GO:GO:0008033	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016740	GO:GO:0016779	GO:GO:0019538	GO:GO:0032447	GO:GO:0034227
InterPro:IPR014729	HAMAP:MF_03053	InterPro:Ncs6/Tuc1/Ctu1	PFAM:PF01171	PFAM:PF16503	PIRSF:PIRSF004976
PANTHER:PTHR11807	PANTHER:PTHR11807:SF12	InterPro:Rossmann-like_a/b/a_fold	EnsemblPlantsGene:SORBI_3004G307600	SUPFAM:SSF52402	unigene:Sbi.2482
TIGRFAMs:TIGR00269	InterPro:TilS/TtcA_N	UniParc:UPI0001A86115	RefSeq:XP_002454594.1	InterPro:tRNA_thiolation_TtcA_Ctu1	:

Description

hypothetical protein

Coordinates

chr4:-:64524270..64527811

Molecular Weight (calculated)

40863.2 Da

IEP (calculated)

8.990

GRAVY (calculated)

-0.402

Length

364 amino acids

Sequence
(BLAST)

001: MDGPAADGAR LPPPRAGSRL CVRCGERKAA LKRPKTLEQI CRECFYIVFE DEIHQTIVEN SLFKAGERVA IGASGGKDST VLAYVLSELN RHHNYGLDLF
101: LLSIDEGITG YRDDSLETVK RNEIQYGLPL KIVSYKDLYG WTMDDIVKAI GLKNNCTFCG VFRRQALDRG AALLKADKIV TGHNADDIAE TVLLNILRGD
201: IARLSRCTFI TTGEDGPIPR CKPFKYTYEK EIVMYAYFKK LDYFSTECIY SPNAYRGFAR EFIKDLERMR PRAILDIIKS GENFRISTTT RMPEQGTCER
301: CGYISSQKLC KACVLLDGLN RGLPKLGIGR TKSGAGADSD GKQRTKRSER RNTSLQGKHG NFDF

Best Arabidopsis Sequence Match ( AT2G44270.1 )
(BLAST)

001: MEAKNKKAVA SRLCCLCNLR RPVLKRPKTL QQICRECFYE VFEEEIHQVI VQNRLFKSGE RVAIGASGGK DSTVLAYVLS ELNRRHNYGL DLFLLSIDEG
101: ITGYRDDSLE TVKRNEVQYG LPLKIVSYKD LYGWTMDEIV KMIGLKNNCT FCGVFRRQAL DRGAALLKVE KLVTGHNADD IAETVLLNIL RGDIARLSRC
201: TSITTGEDGP IPRCKPFKYT YEKEIVMYAY FKKLDYFSTE CIYSPNAYRG FAREFIKDLE RIRPRAILDI IKSGEDFRIA TTTKMPEQGT CERCGYISSQ
301: KWCKACVLLE GLNRGLPKMG IGRPRGVNGD HNKETKKPGS VAKSIESKQC GSLDF

Arabidopsis Description

NCS6Cytoplasmic tRNA 2-thiolation protein 1 [Source:UniProtKB/TrEMBL;Acc:A0A178VUZ0]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.