CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 2
cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY64359	Canola	cytosol	97.98	97.98
CDX87632	Canola	cytosol	80.4	87.46
CDX73239	Canola	cytosol	87.32	84.64
Bra004822.1-P	Field mustard	cytosol	95.97	83.46
Os01t0598900-00	Rice	cytosol	73.49	78.46
TraesCS5D01G217500.1	Wheat	mitochondrion	79.25	76.39
TraesCS5A01G214500.1	Wheat	mitochondrion	79.25	76.39
TraesCS5B01G209300.1	Wheat	mitochondrion	78.96	76.11
AT1G76170.7	Thale cress	cytosol	79.25	75.34
Solyc08g074580.2.1	Tomato	mitochondrion	27.38	74.22
Os02t0762300-01	Rice	cytosol	77.52	74.1
KRH60667	Soybean	cytosol	75.22	73.94
VIT_18s0001g00440.t01	Wine grape	cytosol	78.39	73.51
EES07570	Sorghum	cytosol	76.95	73.35
HORVU6Hr1G078790.1	Barley	cytosol	18.16	68.48
GSMUA_Achr7P03970_001	Banana	cytosol, mitochondrion, plastid	26.51	68.15
HORVU5Hr1G061960.1	Barley	cytosol	78.67	65.62
Zm00001d018148_P003	Maize	cytosol	73.78	63.21

Protein Annotations

MapMan:16.6.5.1.4.1	Gene3D:3.40.50.620	GO:A0A078FXW4	UniProt:A0A078FXW4	EnsemblPlants:CDY17861	ProteinID:CDY17861
ProteinID:CDY17861.1	InterPro:CTU1_C	GO:GO:0000049	GO:GO:0002098	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006139	GO:GO:0006464	GO:GO:0008033	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016740	GO:GO:0016779	GO:GO:0019538	GO:GO:0032447	GO:GO:0034227
EnsemblPlantsGene:GSBRNA2T00002197001	InterPro:IPR014729	HAMAP:MF_03053	InterPro:Ncs6/Tuc1/Ctu1	PFAM:PF01171	PFAM:PF16503
PIRSF:PIRSF004976	ScanProsite:PS01263	PANTHER:PTHR11807	PANTHER:PTHR11807:SF12	InterPro:Rossmann-like_a/b/a_fold	SUPFAM:SSF52402
InterPro:TilS/TtcA_N	UniPathway:UPA00988	InterPro:UPF0021_CS	UniParc:UPI0004EEF4B2	InterPro:tRNA_thiolation_TtcA_Ctu1	:

Description

BnaC04g03580DCytoplasmic tRNA 2-thiolation protein 1 [Source:UniProtKB/TrEMBL;Acc:A0A078FXW4]

Coordinates

chrLK032079:+:132354..134723

Molecular Weight (calculated)

39000.1 Da

IEP (calculated)

8.815

GRAVY (calculated)

-0.351

Length

347 amino acids

Sequence
(BLAST)

001: MEASEAKSKK QGASRLCCLC NQRRPVLKRP KTLQQICKDC FYEVFEEEIH QVIVKNGLFK AGERVAIGAS GGKDSTVLAY VLSELNRRHS YGLDLFLLSI
101: DEGITGYRDD SLETVKRNEL QYGLPLQILS YKDLYGWTMD DIVKMIGLKN NCTFCGVFRR QALDRGAALL KVDKLVTGHN ADDIAETVLL NILRGDIARL
201: SRCTSITTVY IREGDLHTYA YFKKLDYFST ECIYSPNAYR GFAREFIKDL ERLRPRAILD IIKSGEDFRI ATTTKMPEQG TCERCGYISS QKWCKACVLL
301: DGLNRGLPKM GIGRARGGAN GDHHKETKKP ASAGRSLESK QCGSLDF

Best Arabidopsis Sequence Match ( AT2G44270.1 )
(BLAST)

001: MEAKNKKAVA SRLCCLCNLR RPVLKRPKTL QQICRECFYE VFEEEIHQVI VQNRLFKSGE RVAIGASGGK DSTVLAYVLS ELNRRHNYGL DLFLLSIDEG
101: ITGYRDDSLE TVKRNEVQYG LPLKIVSYKD LYGWTMDEIV KMIGLKNNCT FCGVFRRQAL DRGAALLKVE KLVTGHNADD IAETVLLNIL RGDIARLSRC
201: TSITTGEDGP IPRCKPFKYT YEKEIVMYAY FKKLDYFSTE CIYSPNAYRG FAREFIKDLE RIRPRAILDI IKSGEDFRIA TTTKMPEQGT CERCGYISSQ
301: KWCKACVLLE GLNRGLPKMG IGRPRGVNGD HNKETKKPGS VAKSIESKQC GSLDF

Arabidopsis Description

NCS6Cytoplasmic tRNA 2-thiolation protein 1 [Source:UniProtKB/TrEMBL;Acc:A0A178VUZ0]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.