Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 2
- cytosol 3
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX87632 | Canola | cytosol | 73.97 | 84.64 |
| AT2G44270.1 | Thale cress | mitochondrion | 80.82 | 83.1 |
| Os01t0598900-00 | Rice | cytosol | 72.6 | 81.54 |
| CDX73239 | Canola | cytosol | 78.9 | 80.45 |
| CDY64359 | Canola | cytosol | 75.89 | 79.83 |
| Bra015780.1-P | Field mustard | cytosol | 81.1 | 79.57 |
| CDY17861 | Canola | cytosol | 75.34 | 79.25 |
| KRH60667 | Soybean | cytosol | 73.7 | 76.2 |
| VIT_18s0001g00440.t01 | Wine grape | cytosol | 75.62 | 74.59 |
| Bra004822.1-P | Field mustard | cytosol | 80.82 | 73.93 |
| TraesCS5D01G217500.1 | Wheat | mitochondrion | 72.88 | 73.89 |
| TraesCS5A01G214500.1 | Wheat | mitochondrion | 72.88 | 73.89 |
| Os02t0762300-01 | Rice | cytosol | 73.42 | 73.83 |
| TraesCS5B01G209300.1 | Wheat | mitochondrion | 72.6 | 73.61 |
| HORVU6Hr1G078790.1 | Barley | cytosol | 18.08 | 71.74 |
| EES07570 | Sorghum | cytosol | 71.23 | 71.43 |
| Solyc08g074580.2.1 | Tomato | mitochondrion | 24.38 | 69.53 |
| GSMUA_Achr7P03970_001 | Banana | cytosol, mitochondrion, plastid | 25.21 | 68.15 |
| HORVU5Hr1G061960.1 | Barley | cytosol | 72.88 | 63.94 |
| Zm00001d018148_P003 | Maize | cytosol | 68.22 | 61.48 |
Protein Annotations
| MapMan:16.6.5.1.4.1 | EntrezGene:843949 | UniProt:A0A1P8ASI0 | ProteinID:ANM59616.1 | ArrayExpress:AT1G76170 | EnsemblPlantsGene:AT1G76170 |
| RefSeq:AT1G76170 | TAIR:AT1G76170 | RefSeq:AT1G76170-TAIR-G | EnsemblPlants:AT1G76170.7 | Unigene:At.50040 | InterPro:CTU1_C |
| GO:GO:0000049 | GO:GO:0002098 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 |
| GO:GO:0006139 | GO:GO:0008033 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0034227 |
| RefSeq:NP_001321961.1 | InterPro:Ncs6/Tuc1/Ctu1 | PFAM:PF01171 | PFAM:PF16503 | PIRSF:PIRSF004976 | PANTHER:PTHR11807 |
| PANTHER:PTHR11807:SF12 | SUPFAM:SSF52402 | TIGRFAMs:TIGR00269 | InterPro:TilS/TtcA_N | UniParc:UPI0008490DAC | InterPro:tRNA_thiolation_TtcA_Ctu1 |
Description
2-thiocytidine tRNA biosynthesis protein, TtcA [Source:TAIR;Acc:AT1G76170]
Coordinates
chr1:-:28584008..28586225
Molecular Weight (calculated)
41311.0 Da
IEP (calculated)
8.297
GRAVY (calculated)
-0.220
Length
365 amino acids
Sequence
(BLAST)
(BLAST)
001: MEAGEEKSKK AGGECFYEVF EEEIHQVIVG NRLFKFGERV AIGASGGKDS SVLAYVLSEL NRRHSYGLDL FLLSIDEGIT GYRDDSLETV KRNEVQYGLP
101: LQIVSYKDLY GWTMDEIVKM IGLKNNCTFC GVFRRQVRSK FLHSIPSLSK FLQNRLFCFM ILCLVEFLKA LDRGAALLKV DKLVTGHNAD DIAETVVLNI
201: LRGDIARLSR CTSITTGEDG PIPRCKPFKY TYEKEIVMYA YFKKLDYFST ECIYSPNAYR GFACEFINDL ERLRPRAILD IIKSGEDFRI ATTTKMPEQG
301: TCERCGYISS QKWCKACVLL EGLNRGLPKM GIGRPRGNVN GDYKDIKARS TAKTIESKQC GSLDF
101: LQIVSYKDLY GWTMDEIVKM IGLKNNCTFC GVFRRQVRSK FLHSIPSLSK FLQNRLFCFM ILCLVEFLKA LDRGAALLKV DKLVTGHNAD DIAETVVLNI
201: LRGDIARLSR CTSITTGEDG PIPRCKPFKY TYEKEIVMYA YFKKLDYFST ECIYSPNAYR GFACEFINDL ERLRPRAILD IIKSGEDFRI ATTTKMPEQG
301: TCERCGYISS QKWCKACVLL EGLNRGLPKM GIGRPRGNVN GDYKDIKARS TAKTIESKQC GSLDF
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.