Factsheet for Solyc08g074580.2.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 5
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P03970_001	Banana	cytosol, mitochondrion, plastid	67.19	63.7
Os01t0598900-00	Rice	cytosol	69.53	27.38
CDY64359	Canola	cytosol	74.22	27.38
CDY17861	Canola	cytosol	74.22	27.38
AT2G44270.1	Thale cress	mitochondrion	75.78	27.32
KRH60667	Soybean	cytosol	71.88	26.06
CDX73239	Canola	cytosol	71.88	25.7
VIT_18s0001g00440.t01	Wine grape	cytosol	74.22	25.68
EES07570	Sorghum	cytosol	70.31	24.73
Bra015780.1-P	Field mustard	cytosol	71.09	24.46
TraesCS5D01G217500.1	Wheat	mitochondrion	68.75	24.44
TraesCS5A01G214500.1	Wheat	mitochondrion	68.75	24.44
TraesCS5B01G209300.1	Wheat	mitochondrion	68.75	24.44
AT1G76170.7	Thale cress	cytosol	69.53	24.38
Bra004822.1-P	Field mustard	cytosol	75.0	24.06
Os02t0762300-01	Rice	cytosol	67.97	23.97
CDX87632	Canola	cytosol	58.59	23.51
Zm00001d018148_P003	Maize	cytosol	69.53	21.98
HORVU5Hr1G061960.1	Barley	cytosol	67.97	20.91
HORVU6Hr1G078790.1	Barley	cytosol	2.34	3.26
Solyc08g074590.2.1	Tomato	cytosol	4.69	2.62

Protein Annotations

MapMan:16.6.5.1.4.1	Gene3D:3.40.50.620	InterPro:CTU1_C	GO:GO:0000049	GO:GO:0002098	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0034227	InterPro:IPR014729	UniProt:K4CMH6	InterPro:Ncs6/Tuc1/Ctu1	PFAM:PF16503
PANTHER:PTHR11807	PANTHER:PTHR11807:SF12	InterPro:Rossmann-like_a/b/a_fold	EnsemblPlantsGene:Solyc08g074580.2	EnsemblPlants:Solyc08g074580.2.1	UniParc:UPI000276B0E1

Description

No Description!

Coordinates

chr8:-:58686038..58688762

Molecular Weight (calculated)

14382.3 Da

IEP (calculated)

10.123

GRAVY (calculated)

-0.595

Length

128 amino acids

Sequence
(BLAST)

001: MHTLKSWTTS LQNVSIYSPN AYRGFAREFI KHLERMRPRA ILDIIKSGED FRISTSTKMP EQGTCERCGY ISSQKWCKAC VLLEGLNRGL PKLGIGRSRG
101: INSEHNANTK QANGTQSLQS KQCGSLDF

Best Arabidopsis Sequence Match ( AT2G44270.1 )
(BLAST)

001: MEAKNKKAVA SRLCCLCNLR RPVLKRPKTL QQICRECFYE VFEEEIHQVI VQNRLFKSGE RVAIGASGGK DSTVLAYVLS ELNRRHNYGL DLFLLSIDEG
101: ITGYRDDSLE TVKRNEVQYG LPLKIVSYKD LYGWTMDEIV KMIGLKNNCT FCGVFRRQAL DRGAALLKVE KLVTGHNADD IAETVLLNIL RGDIARLSRC
201: TSITTGEDGP IPRCKPFKYT YEKEIVMYAY FKKLDYFSTE CIYSPNAYRG FAREFIKDLE RIRPRAILDI IKSGEDFRIA TTTKMPEQGT CERCGYISSQ
301: KWCKACVLLE GLNRGLPKMG IGRPRGVNGD HNKETKKPGS VAKSIESKQC GSLDF

Arabidopsis Description

NCS6Cytoplasmic tRNA 2-thiolation protein 1 [Source:UniProtKB/TrEMBL;Acc:A0A178VUZ0]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.