Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 3
- cytosol 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU6Hr1G078790.1 | Barley | cytosol | 27.07 | 67.39 |
| Os02t0762300-01 | Rice | cytosol | 85.59 | 53.99 |
| TraesCS5A01G214500.1 | Wheat | mitochondrion | 84.28 | 53.61 |
| TraesCS5D01G217500.1 | Wheat | mitochondrion | 84.28 | 53.61 |
| Os01t0598900-00 | Rice | cytosol | 75.98 | 53.54 |
| TraesCS5B01G209300.1 | Wheat | mitochondrion | 83.84 | 53.33 |
| EES07570 | Sorghum | cytosol | 84.28 | 53.02 |
| Zm00001d018148_P003 | Maize | cytosol | 84.28 | 47.65 |
| HORVU5Hr1G061960.1 | Barley | cytosol | 83.84 | 46.15 |
| GSMUA_Achr7P03970_001 | Banana | cytosol, mitochondrion, plastid | 3.49 | 5.93 |
| Solyc08g074580.2.1 | Tomato | mitochondrion | 2.62 | 4.69 |
Protein Annotations
| MapMan:16.6.5.1.4.1 | Gene3D:3.40.50.620 | GO:GO:0000049 | GO:GO:0002098 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0008033 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009987 | GO:GO:0034227 | InterPro:IPR014729 | UniProt:K4CMH7 | InterPro:Ncs6/Tuc1/Ctu1 | PFAM:PF01171 |
| PIRSF:PIRSF004976 | PANTHER:PTHR11807 | PANTHER:PTHR11807:SF12 | InterPro:Rossmann-like_a/b/a_fold | SUPFAM:SSF52402 | EnsemblPlantsGene:Solyc08g074590.2 |
| EnsemblPlants:Solyc08g074590.2.1 | InterPro:TilS/TtcA_N | UniParc:UPI000276B0E2 | InterPro:tRNA_thiolation_TtcA_Ctu1 | : | : |
Description
No Description!
Coordinates
chr8:-:58688463..58693432
Molecular Weight (calculated)
25976.6 Da
IEP (calculated)
8.188
GRAVY (calculated)
-0.214
Length
229 amino acids
Sequence
(BLAST)
(BLAST)
001: MEKTAKPKSR LCTLCNEKRA ALKRPKTLEQ ICRECFYTVF EDEIHRVIVD NQLFKPGERI AIGASGGKDS TVLAYVMSEL NRRHNYGLDL FLLSVDEGIT
101: GYRDDSLETV KRNEIQYGLP LKVVSYSELY GWTMDEIVKL IGLKNNCTFC GVFRRQALDR GAALLKVDKL VTGHNADDIA ETVLLNILRG DIARLGRCTS
201: IITGEDGPIP RCKPFKYTYE KEIVIYPFL
101: GYRDDSLETV KRNEIQYGLP LKVVSYSELY GWTMDEIVKL IGLKNNCTFC GVFRRQALDR GAALLKVDKL VTGHNADDIA ETVLLNILRG DIARLGRCTS
201: IITGEDGPIP RCKPFKYTYE KEIVIYPFL
001: MEAKNKKAVA SRLCCLCNLR RPVLKRPKTL QQICRECFYE VFEEEIHQVI VQNRLFKSGE RVAIGASGGK DSTVLAYVLS ELNRRHNYGL DLFLLSIDEG
101: ITGYRDDSLE TVKRNEVQYG LPLKIVSYKD LYGWTMDEIV KMIGLKNNCT FCGVFRRQAL DRGAALLKVE KLVTGHNADD IAETVLLNIL RGDIARLSRC
201: TSITTGEDGP IPRCKPFKYT YEKEIVMYAY FKKLDYFSTE CIYSPNAYRG FAREFIKDLE RIRPRAILDI IKSGEDFRIA TTTKMPEQGT CERCGYISSQ
301: KWCKACVLLE GLNRGLPKMG IGRPRGVNGD HNKETKKPGS VAKSIESKQC GSLDF
101: ITGYRDDSLE TVKRNEVQYG LPLKIVSYKD LYGWTMDEIV KMIGLKNNCT FCGVFRRQAL DRGAALLKVE KLVTGHNADD IAETVLLNIL RGDIARLSRC
201: TSITTGEDGP IPRCKPFKYT YEKEIVMYAY FKKLDYFSTE CIYSPNAYRG FAREFIKDLE RIRPRAILDI IKSGEDFRIA TTTKMPEQGT CERCGYISSQ
301: KWCKACVLLE GLNRGLPKMG IGRPRGVNGD HNKETKKPGS VAKSIESKQC GSLDF
Arabidopsis Description
NCS6Cytoplasmic tRNA 2-thiolation protein 1 [Source:UniProtKB/TrEMBL;Acc:A0A178VUZ0]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.