Factsheet for Zm00001d018148_P003

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
MultiLoc:	cytosol
PProwler:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES07570	Sorghum	cytosol	83.46	92.86
Os02t0762300-01	Rice	cytosol	78.52	87.6
Os01t0598900-00	Rice	cytosol	70.12	87.38
TraesCS5D01G217500.1	Wheat	mitochondrion	77.04	86.67
TraesCS5A01G214500.1	Wheat	mitochondrion	77.04	86.67
TraesCS5B01G209300.1	Wheat	mitochondrion	76.79	86.39
Solyc08g074590.2.1	Tomato	cytosol	47.65	84.28
GSMUA_Achr7P03980_001	Banana	cytosol	49.88	83.13
CDX87632	Canola	cytosol	62.96	79.94
AT2G44270.1	Thale cress	mitochondrion	67.9	77.46
KRH60667	Soybean	cytosol	67.16	77.05
HORVU5Hr1G061960.1	Barley	cytosol	77.28	75.24
CDY17861	Canola	cytosol	63.21	73.78
CDX73239	Canola	cytosol	65.19	73.74
CDY64359	Canola	cytosol	62.96	73.49
VIT_18s0001g00440.t01	Wine grape	cytosol	66.67	72.97
Bra015780.1-P	Field mustard	cytosol	66.91	72.85
HORVU6Hr1G078790.1	Barley	cytosol	16.3	71.74
Solyc08g074580.2.1	Tomato	mitochondrion	21.98	69.53
Bra004822.1-P	Field mustard	cytosol	67.41	68.42
AT1G76170.7	Thale cress	cytosol	61.48	68.22

Protein Annotations

EntrezGene:100193637	MapMan:16.6.5.1.4.1	Gene3D:3.40.50.620	UniProt:A0A1D6HL54	ProteinID:AQK75153.1	InterPro:CTU1_C
GO:GO:0000049	GO:GO:0002098	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139
GO:GO:0006464	GO:GO:0008033	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	GO:GO:0016740	GO:GO:0016779	GO:GO:0019538	GO:GO:0032447	GO:GO:0034227
InterPro:IPR014729	HAMAP:MF_03053	InterPro:Ncs6/Tuc1/Ctu1	PFAM:PF01171	PFAM:PF16503	PIRSF:PIRSF004976
PANTHER:PTHR11807	PANTHER:PTHR11807:SF12	InterPro:Rossmann-like_a/b/a_fold	SUPFAM:SSF52402	TMHMM:TMhelix	InterPro:TilS/TtcA_N
UniParc:UPI0008428A6C	EnsemblPlantsGene:Zm00001d018148	EnsemblPlants:Zm00001d018148_P003	EnsemblPlants:Zm00001d018148_T003	SEG:seg	InterPro:tRNA_thiolation_TtcA_Ctu1

Description

Cytoplasmic tRNA 2-thiolation protein 1

Coordinates

chr5:-:215523072..215536003

Molecular Weight (calculated)

45520.9 Da

IEP (calculated)

8.956

GRAVY (calculated)

-0.268

Length

405 amino acids

Sequence
(BLAST)

001: MDSSATDGAR LPPPRAGSRL CVRCGERKAA LKRPKTLEQI CRECFYIIFE DEIHQTIVQN SLFKAGERVA IGASGGKDST VLAYVLSELN RQHNYGLDLF
101: LLSVDEGITG YRDDSLETVK RNEIQYGLPL KIVSYKDLYG WTMDDIVKAI GLKNNCTFCG VFRRQALDRG AALLKADKIV TGHNADDIAE TVLLNILRGD
201: IARLSRCTFI TTGEDGPIPR CKPFKYTYEK EIVIYPVYEI SYIFIFLLFL FIFSRIEGDH FIPISENARM SLESKYRSQT SLSALPFIGI YSPNAYRGFA
301: REFIKDLERM RPRAILDIIK SGENFRISTT TRMPEQGTCE RCGYISSQKL CKACVLLDGL NRGLPKLGIG STKAGARADS DGKQRTKRSE RNTSSLQGKH
401: GNFDF

Best Arabidopsis Sequence Match ( AT2G44270.1 )
(BLAST)

001: MEAKNKKAVA SRLCCLCNLR RPVLKRPKTL QQICRECFYE VFEEEIHQVI VQNRLFKSGE RVAIGASGGK DSTVLAYVLS ELNRRHNYGL DLFLLSIDEG
101: ITGYRDDSLE TVKRNEVQYG LPLKIVSYKD LYGWTMDEIV KMIGLKNNCT FCGVFRRQAL DRGAALLKVE KLVTGHNADD IAETVLLNIL RGDIARLSRC
201: TSITTGEDGP IPRCKPFKYT YEKEIVMYAY FKKLDYFSTE CIYSPNAYRG FAREFIKDLE RIRPRAILDI IKSGEDFRIA TTTKMPEQGT CERCGYISSQ
301: KWCKACVLLE GLNRGLPKMG IGRPRGVNGD HNKETKKPGS VAKSIESKQC GSLDF

Arabidopsis Description

NCS6Cytoplasmic tRNA 2-thiolation protein 1 [Source:UniProtKB/TrEMBL;Acc:A0A178VUZ0]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.