Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- golgi 1
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc08g074590.2.1 | Tomato | cytosol | 67.39 | 27.07 |
| GSMUA_Achr7P03980_001 | Banana | cytosol | 68.48 | 25.93 |
| CDX87632 | Canola | cytosol | 71.74 | 20.69 |
| Os01t0598900-00 | Rice | cytosol | 71.74 | 20.31 |
| AT2G44270.1 | Thale cress | mitochondrion | 71.74 | 18.59 |
| Os02t0762300-01 | Rice | cytosol | 72.83 | 18.46 |
| EES07570 | Sorghum | cytosol | 72.83 | 18.41 |
| CDY17861 | Canola | cytosol | 68.48 | 18.16 |
| CDY64359 | Canola | cytosol | 68.48 | 18.16 |
| AT1G76170.7 | Thale cress | cytosol | 71.74 | 18.08 |
| CDX73239 | Canola | cytosol | 69.57 | 17.88 |
| VIT_18s0001g00440.t01 | Wine grape | cytosol | 70.65 | 17.57 |
| Bra015780.1-P | Field mustard | cytosol | 69.57 | 17.2 |
| KRH60667 | Soybean | cytosol | 64.13 | 16.71 |
| HORVU5Hr1G061960.1 | Barley | cytosol | 75.0 | 16.59 |
| Zm00001d018148_P003 | Maize | cytosol | 71.74 | 16.3 |
| Bra004822.1-P | Field mustard | cytosol | 69.57 | 16.04 |
| Solyc08g074580.2.1 | Tomato | mitochondrion | 3.26 | 2.34 |
Protein Annotations
| Gene3D:3.40.50.620 | MapMan:35.1 | UniProt:A0A287UTT5 | GO:GO:0000049 | GO:GO:0002098 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0006139 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0034227 | EnsemblPlantsGene:HORVU6Hr1G078790 |
| EnsemblPlants:HORVU6Hr1G078790.1 | InterPro:IPR014729 | InterPro:Ncs6/Tuc1/Ctu1 | PANTHER:PTHR11807 | PANTHER:PTHR11807:SF12 | InterPro:Rossmann-like_a/b/a_fold |
| SUPFAM:SSF52402 | TMHMM:TMhelix | UniParc:UPI000B482A80 | : | : | : |
Description
No Description!
Coordinates
chrchr6H:-:535850498..535865216
Molecular Weight (calculated)
10770.2 Da
IEP (calculated)
5.818
GRAVY (calculated)
0.192
Length
92 amino acids
Sequence
(BLAST)
(BLAST)
1: MLACVLSELN KRRRYHLDVF LLSIDEGITG YRDDSLETVK RNEIQYGLPL KIVSYKDLYD WTMDNIVKAI GLKTIVISVV FSDFIFMYQL LT
001: MEAKNKKAVA SRLCCLCNLR RPVLKRPKTL QQICRECFYE VFEEEIHQVI VQNRLFKSGE RVAIGASGGK DSTVLAYVLS ELNRRHNYGL DLFLLSIDEG
101: ITGYRDDSLE TVKRNEVQYG LPLKIVSYKD LYGWTMDEIV KMIGLKNNCT FCGVFRRQAL DRGAALLKVE KLVTGHNADD IAETVLLNIL RGDIARLSRC
201: TSITTGEDGP IPRCKPFKYT YEKEIVMYAY FKKLDYFSTE CIYSPNAYRG FAREFIKDLE RIRPRAILDI IKSGEDFRIA TTTKMPEQGT CERCGYISSQ
301: KWCKACVLLE GLNRGLPKMG IGRPRGVNGD HNKETKKPGS VAKSIESKQC GSLDF
101: ITGYRDDSLE TVKRNEVQYG LPLKIVSYKD LYGWTMDEIV KMIGLKNNCT FCGVFRRQAL DRGAALLKVE KLVTGHNADD IAETVLLNIL RGDIARLSRC
201: TSITTGEDGP IPRCKPFKYT YEKEIVMYAY FKKLDYFSTE CIYSPNAYRG FAREFIKDLE RIRPRAILDI IKSGEDFRIA TTTKMPEQGT CERCGYISSQ
301: KWCKACVLLE GLNRGLPKMG IGRPRGVNGD HNKETKKPGS VAKSIESKQC GSLDF
Arabidopsis Description
NCS6Cytoplasmic tRNA 2-thiolation protein 1 [Source:UniProtKB/TrEMBL;Acc:A0A178VUZ0]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.