Factsheet for Os01t0598900-00

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 2
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os02t0762300-01	Rice	cytosol	96.62	86.5
TraesCS5D01G217500.1	Wheat	mitochondrion	93.54	84.44
TraesCS5B01G209300.1	Wheat	mitochondrion	93.54	84.44
TraesCS5A01G214500.1	Wheat	mitochondrion	93.54	84.44
EES07570	Sorghum	cytosol	90.46	80.77
CDX87632	Canola	cytosol	77.23	78.68
AT2G44270.1	Thale cress	mitochondrion	84.0	76.9
KRH60667	Soybean	cytosol	82.77	76.2
Solyc08g074590.2.1	Tomato	cytosol	53.54	75.98
CDY64359	Canola	cytosol	78.77	73.78
CDY17861	Canola	cytosol	78.46	73.49
CDX73239	Canola	cytosol	80.92	73.46
GSMUA_Achr7P03980_001	Banana	cytosol	54.77	73.25
Bra015780.1-P	Field mustard	cytosol	83.38	72.85
AT1G76170.7	Thale cress	cytosol	81.54	72.6
HORVU5Hr1G061960.1	Barley	cytosol	92.92	72.6
VIT_18s0001g00440.t01	Wine grape	cytosol	81.85	71.89
HORVU6Hr1G078790.1	Barley	cytosol	20.31	71.74
Zm00001d018148_P003	Maize	cytosol	87.38	70.12
Solyc08g074580.2.1	Tomato	mitochondrion	27.38	69.53
Bra004822.1-P	Field mustard	cytosol	84.31	68.67

Protein Annotations

MapMan:16.6.5.1.4.1	Gene3D:3.40.50.620	UniProt:A0A0P0V4V4	ProteinID:BAS73008.1	InterPro:CTU1_C	GO:GO:0000049
GO:GO:0002098	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0006139
GO:GO:0008033	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0034227	InterPro:IPR014729
HAMAP:MF_03053	InterPro:Ncs6/Tuc1/Ctu1	EnsemblPlantsGene:Os01g0598900	EnsemblPlants:Os01t0598900-00	PFAM:PF01171	PFAM:PF16503
PIRSF:PIRSF004976	PANTHER:PTHR11807	PANTHER:PTHR11807:SF12	InterPro:Rossmann-like_a/b/a_fold	SUPFAM:SSF52402	TIGRFAMs:TIGR00269
InterPro:TilS/TtcA_N	UniParc:UPI000393C13E	InterPro:tRNA_thiolation_TtcA_Ctu1	:	:	:

Description

Cytoplasmic tRNA 2-thiolation protein 1. (Os01t0598900-00)

Coordinates

chr1:-:23530089..23532422

Molecular Weight (calculated)

36742.2 Da

IEP (calculated)

8.229

GRAVY (calculated)

-0.321

Length

325 amino acids

Sequence
(BLAST)

001: ICRECFYIVF EDEIHQTIVE NNLFKPGDRV AIGASGGKDS TVLAYVLSEL NHRHKYCLDL FLLSVDEGIT GYRDDSLETV KRNEIQYGLP LKIISYKDLY
101: GWTMDDIVKA IGLKNNCTFC GVFRRQALDR GAALLKVDKI VTGHNADDIA ETVLLNILRG DIARLSRCTF ITTGEDGPIP RCKPFKYTYE KEIVMYAYFK
201: KLDYFSTECI YSPNAYRGFA REFIKDLERM RPRAILDIIK SGENFRISTT TRMPEQGTCE RCGYISSQKL CKACVLLDGL NRGLPKLGIG RTKGVAGGDS
301: DCEQQAKRPE RSRSSLQGKH GNVDF

Best Arabidopsis Sequence Match ( AT2G44270.1 )
(BLAST)

001: MEAKNKKAVA SRLCCLCNLR RPVLKRPKTL QQICRECFYE VFEEEIHQVI VQNRLFKSGE RVAIGASGGK DSTVLAYVLS ELNRRHNYGL DLFLLSIDEG
101: ITGYRDDSLE TVKRNEVQYG LPLKIVSYKD LYGWTMDEIV KMIGLKNNCT FCGVFRRQAL DRGAALLKVE KLVTGHNADD IAETVLLNIL RGDIARLSRC
201: TSITTGEDGP IPRCKPFKYT YEKEIVMYAY FKKLDYFSTE CIYSPNAYRG FAREFIKDLE RIRPRAILDI IKSGEDFRIA TTTKMPEQGT CERCGYISSQ
301: KWCKACVLLE GLNRGLPKMG IGRPRGVNGD HNKETKKPGS VAKSIESKQC GSLDF

Arabidopsis Description

NCS6Cytoplasmic tRNA 2-thiolation protein 1 [Source:UniProtKB/TrEMBL;Acc:A0A178VUZ0]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.