Factsheet for TraesCS5B01G209300.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 5
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G217500.1	Wheat	mitochondrion	99.72	99.72
TraesCS5A01G214500.1	Wheat	mitochondrion	99.72	99.72
Os01t0598900-00	Rice	cytosol	84.44	93.54
Os02t0762300-01	Rice	cytosol	92.5	91.74
EES07570	Sorghum	cytosol	89.17	88.19
HORVU5Hr1G061960.1	Barley	cytosol	98.06	84.86
CDX87632	Canola	cytosol	74.72	84.33
Solyc08g074590.2.1	Tomato	cytosol	53.33	83.84
AT2G44270.1	Thale cress	mitochondrion	80.56	81.69
GSMUA_Achr7P03980_001	Banana	cytosol	55.0	81.48
KRH60667	Soybean	cytosol	78.06	79.6
CDY17861	Canola	cytosol	76.11	78.96
CDX73239	Canola	cytosol	78.33	78.77
CDY64359	Canola	cytosol	75.56	78.39
Bra015780.1-P	Field mustard	cytosol	80.83	78.23
Zm00001d018148_P003	Maize	cytosol	86.39	76.79
VIT_18s0001g00440.t01	Wine grape	cytosol	78.33	76.22
Bra004822.1-P	Field mustard	cytosol	80.56	72.68
AT1G76170.7	Thale cress	cytosol	73.61	72.6
Solyc08g074580.2.1	Tomato	mitochondrion	24.44	68.75

Protein Annotations

MapMan:16.6.5.1.4.1	Gene3D:3.40.50.620	InterPro:CTU1_C	GO:GO:0000049	GO:GO:0002098	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0006139	GO:GO:0008033	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0034227	InterPro:IPR014729	HAMAP:MF_03053	InterPro:Ncs6/Tuc1/Ctu1
PFAM:PF01171	PFAM:PF16503	PIRSF:PIRSF004976	PANTHER:PTHR11807	PANTHER:PTHR11807:SF12	InterPro:Rossmann-like_a/b/a_fold
SUPFAM:SSF52402	TIGRFAMs:TIGR00269	InterPro:TilS/TtcA_N	EnsemblPlantsGene:TraesCS5B01G209300	EnsemblPlants:TraesCS5B01G209300.1	TIGR:cd01993
InterPro:tRNA_thiolation_TtcA_Ctu1	:	:	:	:	:

Description

No Description!

Coordinates

chr5B:+:378993114..378995964

Molecular Weight (calculated)

40457.7 Da

IEP (calculated)

8.882

GRAVY (calculated)

-0.381

Length

360 amino acids

Sequence
(BLAST)

001: MQSAAAPTRA GSRLCTRCGE RKAALKRPKT LEQICRECFY IVFEDEIHQT IVDNNLFKAG ERVAIGASGG KDSTVLAYVL SELNKRHKYD LDLFLLSIDE
101: GITGYRDDSL ETVKRNELQY GLPLKIVSYK DLYDWTMDDI VKAIGLKNNC TFCGVFRRQA LDRGAALLKV DKIVTGHNAD DIAETVLLNI LRGDIARLSR
201: CTFITTGEDG PIPRCKPFKY TYEKEIVMYA YFKKLDYFST ECIYSPNAYR GFAREFIKDL ERMRPRAILD IITSGENFRI STTTRMPEQG TCERCGYISS
301: QKLCKACVLL DGLNRGLPKL GIGRTAKVGA GADGSGEQQG KRAERRNRSS LQGKHGNLDF

Best Arabidopsis Sequence Match ( AT2G44270.1 )
(BLAST)

001: MEAKNKKAVA SRLCCLCNLR RPVLKRPKTL QQICRECFYE VFEEEIHQVI VQNRLFKSGE RVAIGASGGK DSTVLAYVLS ELNRRHNYGL DLFLLSIDEG
101: ITGYRDDSLE TVKRNEVQYG LPLKIVSYKD LYGWTMDEIV KMIGLKNNCT FCGVFRRQAL DRGAALLKVE KLVTGHNADD IAETVLLNIL RGDIARLSRC
201: TSITTGEDGP IPRCKPFKYT YEKEIVMYAY FKKLDYFSTE CIYSPNAYRG FAREFIKDLE RIRPRAILDI IKSGEDFRIA TTTKMPEQGT CERCGYISSQ
301: KWCKACVLLE GLNRGLPKMG IGRPRGVNGD HNKETKKPGS VAKSIESKQC GSLDF

Arabidopsis Description

NCS6Cytoplasmic tRNA 2-thiolation protein 1 [Source:UniProtKB/TrEMBL;Acc:A0A178VUZ0]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.