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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion

Predictor Summary:
  • plastid 1
  • mitochondrion 5
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:mitochondrion
Any Predictor:cytosol, mitochondrion, plastid
BaCelLo:plastid
iPSORT:mitochondrion
MultiLoc:cytosol
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:mitochondrion
YLoc:mitochondrion
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Os01t0598900-00 Rice cytosol 76.9 84.0
KRH60667 Soybean cytosol 80.56 81.02
TraesCS5A01G214500.1 Wheat mitochondrion 81.97 80.83
TraesCS5D01G217500.1 Wheat mitochondrion 81.97 80.83
AT1G76170.7 Thale cress cytosol 83.1 80.82
TraesCS5B01G209300.1 Wheat mitochondrion 81.69 80.56
Os02t0762300-01 Rice cytosol 81.41 79.61
VIT_18s0001g00440.t01 Wine grape cytosol 82.82 79.46
EES07570 Sorghum cytosol 80.56 78.57
Solyc08g074580.2.1 Tomato mitochondrion 27.32 75.78
HORVU6Hr1G078790.1 Barley cytosol 18.59 71.74
HORVU5Hr1G061960.1 Barley cytosol 81.69 69.71
GSMUA_Achr7P03970_001 Banana cytosol, mitochondrion, plastid 26.48 69.63
Zm00001d018148_P003 Maize cytosol 77.46 67.9
Protein Annotations
MapMan:16.6.5.1.4.1Gene3D:3.40.50.620EntrezGene:819035UniProt:A0A178VUZ0ProteinID:AAC16077.1ProteinID:AEC10399.1
EMBL:AK117259ArrayExpress:AT2G44270EnsemblPlantsGene:AT2G44270RefSeq:AT2G44270TAIR:AT2G44270RefSeq:AT2G44270-TAIR-G
EnsemblPlants:AT2G44270.1TAIR:AT2G44270.1EMBL:BT008353InterPro:CTU1_CGO:GO:0000049GO:GO:0002098
GO:GO:0003674GO:GO:0003676GO:GO:0003723GO:GO:0003824GO:GO:0005488GO:GO:0005575
GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0006139GO:GO:0006464GO:GO:0008033
GO:GO:0008150GO:GO:0008152GO:GO:0009987GO:GO:0016740GO:GO:0016779GO:GO:0019538
GO:GO:0032447GO:GO:0034227InterPro:IPR014729HAMAP:MF_03053RefSeq:NP_181956.2InterPro:Ncs6/Tuc1/Ctu1
UniProt:O64862ProteinID:OAP09221.1PFAM:PF01171PFAM:PF16503PIRSF:PIRSF004976PO:PO:0000013
PO:PO:0000037PO:PO:0000230PO:PO:0000293PO:PO:0001054PO:PO:0001078PO:PO:0001081
PO:PO:0001185PO:PO:0004507PO:PO:0007064PO:PO:0007095PO:PO:0007098PO:PO:0007103
PO:PO:0007115PO:PO:0007123PO:PO:0007611PO:PO:0007616PO:PO:0008019PO:PO:0009005
PO:PO:0009006PO:PO:0009009PO:PO:0009010PO:PO:0009025PO:PO:0009029PO:PO:0009030
PO:PO:0009031PO:PO:0009032PO:PO:0009046PO:PO:0009047PO:PO:0009052PO:PO:0020030
PO:PO:0020038PO:PO:0020100PO:PO:0020137PO:PO:0025022PO:PO:0025281PANTHER:PTHR11807
PANTHER:PTHR11807:SF12Symbol:ROL5InterPro:Rossmann-like_a/b/a_foldSUPFAM:SSF52402TIGRFAMs:TIGR00269InterPro:TilS/TtcA_N
UniParc:UPI00000ADD48InterPro:tRNA_thiolation_TtcA_Ctu1::::
Description
NCS6Cytoplasmic tRNA 2-thiolation protein 1 [Source:UniProtKB/TrEMBL;Acc:A0A178VUZ0]
Coordinates
chr2:-:18297878..18300304
Molecular Weight (calculated)
40280.9 Da
IEP (calculated)
9.031
GRAVY (calculated)
-0.351
Length
355 amino acids
Sequence
(BLAST)
001: MEAKNKKAVA SRLCCLCNLR RPVLKRPKTL QQICRECFYE VFEEEIHQVI VQNRLFKSGE RVAIGASGGK DSTVLAYVLS ELNRRHNYGL DLFLLSIDEG
101: ITGYRDDSLE TVKRNEVQYG LPLKIVSYKD LYGWTMDEIV KMIGLKNNCT FCGVFRRQAL DRGAALLKVE KLVTGHNADD IAETVLLNIL RGDIARLSRC
201: TSITTGEDGP IPRCKPFKYT YEKEIVMYAY FKKLDYFSTE CIYSPNAYRG FAREFIKDLE RIRPRAILDI IKSGEDFRIA TTTKMPEQGT CERCGYISSQ
301: KWCKACVLLE GLNRGLPKMG IGRPRGVNGD HNKETKKPGS VAKSIESKQC GSLDF
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.