CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 2
plastid 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os01t0598900-00	Rice	cytosol	76.2	82.77
CDX87632	Canola	cytosol	73.37	81.19
AT2G44270.1	Thale cress	mitochondrion	81.02	80.56
Os02t0762300-01	Rice	cytosol	81.3	79.06
TraesCS5D01G217500.1	Wheat	mitochondrion	79.89	78.33
TraesCS5A01G214500.1	Wheat	mitochondrion	79.89	78.33
TraesCS5B01G209300.1	Wheat	mitochondrion	79.6	78.06
VIT_18s0001g00440.t01	Wine grape	cytosol	81.3	77.57
EES07570	Sorghum	cytosol	79.6	77.2
CDX73239	Canola	cytosol	77.9	76.82
CDY64359	Canola	cytosol	74.5	75.79
Bra015780.1-P	Field mustard	cytosol	79.32	75.27
CDY17861	Canola	cytosol	73.94	75.22
AT1G76170.7	Thale cress	cytosol	76.2	73.7
Solyc08g074580.2.1	Tomato	mitochondrion	26.06	71.88
Bra004822.1-P	Field mustard	cytosol	79.6	70.43
GSMUA_Achr7P03970_001	Banana	cytosol, mitochondrion, plastid	26.35	68.89
HORVU5Hr1G061960.1	Barley	cytosol	79.89	67.79
Zm00001d018148_P003	Maize	cytosol	77.05	67.16
HORVU6Hr1G078790.1	Barley	cytosol	16.71	64.13

Protein Annotations

MapMan:16.6.5.1.4.1	Gene3D:3.40.50.620	EMBL:ACUP02002135	InterPro:CTU1_C	EnsemblPlantsGene:GLYMA_04G002200	GO:GO:0000049
GO:GO:0002098	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0006464
GO:GO:0008033	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016740	GO:GO:0016779
GO:GO:0019538	GO:GO:0032447	GO:GO:0034227	UniProt:I1JSC3	InterPro:IPR014729	EnsemblPlants:KRH60667
ProteinID:KRH60667	ProteinID:KRH60667.1	HAMAP:MF_03053	InterPro:Ncs6/Tuc1/Ctu1	PFAM:PF01171	PFAM:PF16503
PIRSF:PIRSF004976	PANTHER:PTHR11807	PANTHER:PTHR11807:SF12	InterPro:Rossmann-like_a/b/a_fold	SUPFAM:SSF52402	TIGRFAMs:TIGR00269
InterPro:TilS/TtcA_N	UniParc:UPI0001BA38B7	SEG:seg	InterPro:tRNA_thiolation_TtcA_Ctu1	:	:

Description

hypothetical protein

Coordinates

chr4:-:187232..188523

Molecular Weight (calculated)

39729.9 Da

IEP (calculated)

8.747

GRAVY (calculated)

-0.351

Length

353 amino acids

Sequence
(BLAST)

001: MEGEGGERKR GARLCCVCKK SRASVKRPKT LEQICRECFY DAFESEIHQV ILENQLFSPG ERVAIGASGG KDSTVLAYVL SKLNRLHNYG LHLFLLSVDE
101: GITGYRDDSL ETVHRNQIQY GLPLKVVSYK DLYGWTMDEI VRVIGLKNNC TFCGVFRRQA LDRGASLLKV DKVVTGHNAD DIAETVLLNL LRGDVARLSR
201: CTSITTGEDG PIPRCKPFKY TYEKEIVMYA YFKKLDYFST ECIYSPNAYR GFAREFIKDL ERIRPRAILD IIKSGENFRI STSTKMPEQG TCERCGYISS
301: QKWCKACVLL DGLNRGLPKL GIGRSRGSVA SDNGNESKVE KSIQGKQCTT LDF

Best Arabidopsis Sequence Match ( AT2G44270.1 )
(BLAST)

001: MEAKNKKAVA SRLCCLCNLR RPVLKRPKTL QQICRECFYE VFEEEIHQVI VQNRLFKSGE RVAIGASGGK DSTVLAYVLS ELNRRHNYGL DLFLLSIDEG
101: ITGYRDDSLE TVKRNEVQYG LPLKIVSYKD LYGWTMDEIV KMIGLKNNCT FCGVFRRQAL DRGAALLKVE KLVTGHNADD IAETVLLNIL RGDIARLSRC
201: TSITTGEDGP IPRCKPFKYT YEKEIVMYAY FKKLDYFSTE CIYSPNAYRG FAREFIKDLE RIRPRAILDI IKSGEDFRIA TTTKMPEQGT CERCGYISSQ
301: KWCKACVLLE GLNRGLPKMG IGRPRGVNGD HNKETKKPGS VAKSIESKQC GSLDF

Arabidopsis Description

NCS6Cytoplasmic tRNA 2-thiolation protein 1 [Source:UniProtKB/TrEMBL;Acc:A0A178VUZ0]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.