Factsheet for HORVU5Hr1G061960.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
iPSORT:	plastid
MultiLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G217500.1	Wheat	mitochondrion	85.1	98.33
TraesCS5A01G214500.1	Wheat	mitochondrion	85.1	98.33
TraesCS5B01G209300.1	Wheat	mitochondrion	84.86	98.06
Os01t0598900-00	Rice	cytosol	72.6	92.92
Os02t0762300-01	Rice	cytosol	79.81	91.46
EES07570	Sorghum	cytosol	77.4	88.46
CDX87632	Canola	cytosol	64.9	84.64
Solyc08g074590.2.1	Tomato	cytosol	46.15	83.84
GSMUA_Achr7P03980_001	Banana	cytosol	47.84	81.89
AT2G44270.1	Thale cress	mitochondrion	69.71	81.69
KRH60667	Soybean	cytosol	67.79	79.89
CDX73239	Canola	cytosol	67.79	78.77
CDY17861	Canola	cytosol	65.62	78.67
Bra015780.1-P	Field mustard	cytosol	69.95	78.23
CDY64359	Canola	cytosol	65.14	78.1
Zm00001d018148_P003	Maize	cytosol	75.24	77.28
VIT_18s0001g00440.t01	Wine grape	cytosol	67.79	76.22
HORVU6Hr1G078790.1	Barley	cytosol	16.59	75.0
AT1G76170.7	Thale cress	cytosol	63.94	72.88
Bra004822.1-P	Field mustard	cytosol	69.47	72.43
Solyc08g074580.2.1	Tomato	mitochondrion	20.91	67.97

Protein Annotations

MapMan:16.6.5.1.4.1	Gene3D:3.40.50.620	UniProt:A0A287RH15	InterPro:CTU1_C	GO:GO:0000049	GO:GO:0002098
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0006464	GO:GO:0008033
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016740	GO:GO:0016779	GO:GO:0019538
GO:GO:0032447	GO:GO:0034227	EnsemblPlantsGene:HORVU5Hr1G061960	EnsemblPlants:HORVU5Hr1G061960.1	InterPro:IPR014729	HAMAP:MF_03053
InterPro:Ncs6/Tuc1/Ctu1	PFAM:PF01171	PFAM:PF16503	PANTHER:PTHR11807	PANTHER:PTHR11807:SF12	InterPro:Rossmann-like_a/b/a_fold
SUPFAM:SSF52402	TIGRFAMs:TIGR00269	InterPro:TilS/TtcA_N	UniParc:UPI000B47BE93	SEG:seg	:

Description

Cytoplasmic tRNA 2-thiolation protein 1 [Source:UniProtKB/TrEMBL;Acc:A0A287RH15]

Coordinates

chrchr5H:+:482623010..482626248

Molecular Weight (calculated)

40985.5 Da

IEP (calculated)

9.095

GRAVY (calculated)

-0.316

Length

416 amino acids

Sequence
(BLAST)

001: XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XSLTQAPIQP AAAPTRAGSR LCKRCGERKA ALKRPKTLEQ ICRECFYIVF
101: EDEIHQTIVD NNLFKAGERV AIGASGGKDS TVLAYVLSEL NKRHKYGLDL FLLSIDEGIT GYRDDSLETV KRNELQYGLP LKIVSYKDLY DWTMDDIVKA
201: IGLKNNCTFC GVFRRQALDR GAALLKVDKI VTGHNADDIA ETVLLNILRG DIARLSRCTF ITTGEDGPIP RCKPFKYTYE KEIVMYAYFK KLDYFSTECI
301: YSPNAYRGFA REFIKDLERM RPRAILDIIT SGENFRISTT TRMPEQGTCE RCGYISSQKL CKACVLLDGL NRGLPKLGIG RTAKVGARAD GSGEQQGKRA
401: ERNRLSLQGK HGNLDF

Best Arabidopsis Sequence Match ( AT2G44270.1 )
(BLAST)

001: MEAKNKKAVA SRLCCLCNLR RPVLKRPKTL QQICRECFYE VFEEEIHQVI VQNRLFKSGE RVAIGASGGK DSTVLAYVLS ELNRRHNYGL DLFLLSIDEG
101: ITGYRDDSLE TVKRNEVQYG LPLKIVSYKD LYGWTMDEIV KMIGLKNNCT FCGVFRRQAL DRGAALLKVE KLVTGHNADD IAETVLLNIL RGDIARLSRC
201: TSITTGEDGP IPRCKPFKYT YEKEIVMYAY FKKLDYFSTE CIYSPNAYRG FAREFIKDLE RIRPRAILDI IKSGEDFRIA TTTKMPEQGT CERCGYISSQ
301: KWCKACVLLE GLNRGLPKMG IGRPRGVNGD HNKETKKPGS VAKSIESKQC GSLDF

Arabidopsis Description

NCS6Cytoplasmic tRNA 2-thiolation protein 1 [Source:UniProtKB/TrEMBL;Acc:A0A178VUZ0]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.