Factsheet for Bra004822.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 3
cytosol 3
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY64359	Canola	cytosol	85.21	97.98
CDY17861	Canola	cytosol	83.46	95.97
Bra015780.1-P	Field mustard	cytosol	83.96	90.05
Os01t0598900-00	Rice	cytosol	68.67	84.31
TraesCS5D01G217500.1	Wheat	mitochondrion	72.93	80.83
TraesCS5A01G214500.1	Wheat	mitochondrion	72.93	80.83
AT1G76170.7	Thale cress	cytosol	73.93	80.82
TraesCS5B01G209300.1	Wheat	mitochondrion	72.68	80.56
KRH60667	Soybean	cytosol	70.43	79.6
Os02t0762300-01	Rice	cytosol	72.18	79.34
VIT_18s0001g00440.t01	Wine grape	cytosol	73.43	79.19
EES07570	Sorghum	cytosol	71.18	78.02
Solyc08g074580.2.1	Tomato	mitochondrion	24.06	75.0
HORVU6Hr1G078790.1	Barley	cytosol	16.04	69.57
HORVU5Hr1G061960.1	Barley	cytosol	72.43	69.47
GSMUA_Achr7P03970_001	Banana	cytosol, mitochondrion, plastid	23.31	68.89
Zm00001d018148_P003	Maize	cytosol	68.42	67.41

Protein Annotations

MapMan:16.6.5.1.4.1	Gene3D:3.40.50.620	EnsemblPlantsGene:Bra004822	EnsemblPlants:Bra004822.1	EnsemblPlants:Bra004822.1-P	InterPro:CTU1_C
GO:GO:0000049	GO:GO:0002098	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139
GO:GO:0006464	GO:GO:0008033	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016740
GO:GO:0016779	GO:GO:0019538	GO:GO:0032447	GO:GO:0034227	InterPro:IPR014729	UniProt:M4CKT6
HAMAP:MF_03053	InterPro:Ncs6/Tuc1/Ctu1	PFAM:PF01171	PFAM:PF16503	PIRSF:PIRSF004976	ScanProsite:PS01263
PANTHER:PTHR11807	PANTHER:PTHR11807:SF12	InterPro:Rossmann-like_a/b/a_fold	SUPFAM:SSF52402	InterPro:TilS/TtcA_N	InterPro:UPF0021_CS
UniParc:UPI0002547D24	InterPro:tRNA_thiolation_TtcA_Ctu1	:	:	:	:

Description

AT2G44270 (E=3e-123) | ATP binding

Coordinates

chrA05:-:1970933..1973160

Molecular Weight (calculated)

45299.7 Da

IEP (calculated)

8.542

GRAVY (calculated)

-0.278

Length

399 amino acids

Sequence
(BLAST)

001: MEASEGKSKK QGASRLCCLC NQRRPVLKRP KTLQQICKEC FYEVFEEEIH QVIVKNHLFK SGERVAIGAS GGKDSTVLAY VLSELNRRHS YGLDLFLLSI
101: DEGITGYRDD SLETVKRNEL QYGLPLQILS YKDLYGWTMD DIVKMIGLKN NCTFCGVFRR QALDRGAALL KVDKLVTGHN ADDIAETVLL NILRGDIARL
201: SRCTSITTGE DGPIPRCKPF KYTYEKEIVI YPFITESFSC SFSNIYSFFF LISLELVNLR YCDYLNIVHT YAYFKKLDYF STECIYSPNA YRGFAREFIK
301: DLERLRPRAI LDIIKSGEDF RIATTTKMPE QGTCERCGYI SSQKWCKACV LLDGLNRGLP KMGIGRARGG VNGDHQKETK KPASAARSLE SKQCGSLDF

Best Arabidopsis Sequence Match ( AT2G44270.1 )
(BLAST)

001: MEAKNKKAVA SRLCCLCNLR RPVLKRPKTL QQICRECFYE VFEEEIHQVI VQNRLFKSGE RVAIGASGGK DSTVLAYVLS ELNRRHNYGL DLFLLSIDEG
101: ITGYRDDSLE TVKRNEVQYG LPLKIVSYKD LYGWTMDEIV KMIGLKNNCT FCGVFRRQAL DRGAALLKVE KLVTGHNADD IAETVLLNIL RGDIARLSRC
201: TSITTGEDGP IPRCKPFKYT YEKEIVMYAY FKKLDYFSTE CIYSPNAYRG FAREFIKDLE RIRPRAILDI IKSGEDFRIA TTTKMPEQGT CERCGYISSQ
301: KWCKACVLLE GLNRGLPKMG IGRPRGVNGD HNKETKKPGS VAKSIESKQC GSLDF

Arabidopsis Description

NCS6Cytoplasmic tRNA 2-thiolation protein 1 [Source:UniProtKB/TrEMBL;Acc:A0A178VUZ0]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.