Factsheet for GSMUA_Achr7P03970_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, cytosol

Predictor Summary:

plastid 3
mitochondrion 2
cytosol 1
nucleus 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	plastid
EpiLoc:	mitochondrion
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g074580.2.1	Tomato	mitochondrion	63.7	67.19
CDY17861	Canola	cytosol	68.15	26.51
AT2G44270.1	Thale cress	mitochondrion	69.63	26.48
KRH60667	Soybean	cytosol	68.89	26.35
CDX73239	Canola	cytosol	69.63	26.26
CDY64359	Canola	cytosol	67.41	26.22
VIT_18s0001g00440.t01	Wine grape	cytosol	71.11	25.95
AT1G76170.7	Thale cress	cytosol	68.15	25.21
Bra015780.1-P	Field mustard	cytosol	68.89	25.0
CDX87632	Canola	cytosol	55.56	23.51
Bra004822.1-P	Field mustard	cytosol	68.89	23.31
GSMUA_Achr7P03980_001	Banana	cytosol	6.67	3.7
Solyc08g074590.2.1	Tomato	cytosol	5.93	3.49

Protein Annotations

MapMan:16.6.5.1.4.1	Gene3D:3.40.50.620	InterPro:CTU1_C	GO:GO:0000049	GO:GO:0002098	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0034227	EnsemblPlantsGene:GSMUA_Achr7G03970_001	EnsemblPlants:GSMUA_Achr7P03970_001	EnsemblPlants:GSMUA_Achr7T03970_001	InterPro:IPR014729
UniProt:M0TEI7	InterPro:Ncs6/Tuc1/Ctu1	PFAM:PF16503	PANTHER:PTHR11807	PANTHER:PTHR11807:SF12	InterPro:Rossmann-like_a/b/a_fold
UniParc:UPI000295AC21	:	:	:	:	:

Description

Cytoplasmic tRNA 2-thiolation protein 1 [Source:GMGC_GENE;Acc:GSMUA_Achr7G03970_001]

Coordinates

chr7:-:3079399..3081214

Molecular Weight (calculated)

15317.6 Da

IEP (calculated)

10.148

GRAVY (calculated)

-0.470

Length

135 amino acids

Sequence
(BLAST)

001: MSLISTYTAH YLFIPFKCIY SPNAYRGFAR EFIKDLERMR PRAILDIIRS GENFRTATST KMPEQGTCER CGYISSQKLC KACLLLEGLN RGLPKLGIGR
101: ARGTNGLNKR VEQRNLRSER TGSNIESKQC GTLDF

Best Arabidopsis Sequence Match ( AT2G44270.1 )
(BLAST)

001: MEAKNKKAVA SRLCCLCNLR RPVLKRPKTL QQICRECFYE VFEEEIHQVI VQNRLFKSGE RVAIGASGGK DSTVLAYVLS ELNRRHNYGL DLFLLSIDEG
101: ITGYRDDSLE TVKRNEVQYG LPLKIVSYKD LYGWTMDEIV KMIGLKNNCT FCGVFRRQAL DRGAALLKVE KLVTGHNADD IAETVLLNIL RGDIARLSRC
201: TSITTGEDGP IPRCKPFKYT YEKEIVMYAY FKKLDYFSTE CIYSPNAYRG FAREFIKDLE RIRPRAILDI IKSGEDFRIA TTTKMPEQGT CERCGYISSQ
301: KWCKACVLLE GLNRGLPKMG IGRPRGVNGD HNKETKKPGS VAKSIESKQC GSLDF

Arabidopsis Description

NCS6Cytoplasmic tRNA 2-thiolation protein 1 [Source:UniProtKB/TrEMBL;Acc:A0A178VUZ0]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.