Factsheet for VIT_18s0001g00440.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 2
plastid 2
cytosol 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX87632	Canola	cytosol	72.97	84.64
AT2G44270.1	Thale cress	mitochondrion	79.46	82.82
Os01t0598900-00	Rice	cytosol	71.89	81.85
KRH60667	Soybean	cytosol	77.57	81.3
CDX73239	Canola	cytosol	77.03	79.61
Os02t0762300-01	Rice	cytosol	77.3	78.79
Bra015780.1-P	Field mustard	cytosol	79.19	78.76
CDY64359	Canola	cytosol	73.78	78.67
TraesCS5D01G217500.1	Wheat	mitochondrion	76.49	78.61
TraesCS5A01G214500.1	Wheat	mitochondrion	76.49	78.61
CDY17861	Canola	cytosol	73.51	78.39
TraesCS5B01G209300.1	Wheat	mitochondrion	76.22	78.33
EES07570	Sorghum	cytosol	75.14	76.37
AT1G76170.7	Thale cress	cytosol	74.59	75.62
Solyc08g074580.2.1	Tomato	mitochondrion	25.68	74.22
Bra004822.1-P	Field mustard	cytosol	79.19	73.43
GSMUA_Achr7P03970_001	Banana	cytosol, mitochondrion, plastid	25.95	71.11
HORVU6Hr1G078790.1	Barley	cytosol	17.57	70.65
HORVU5Hr1G061960.1	Barley	cytosol	76.22	67.79
Zm00001d018148_P003	Maize	cytosol	72.97	66.67

Protein Annotations

EntrezGene:100242135	wikigene:100242135	MapMan:16.6.5.1.4.1	Gene3D:3.40.50.620	ProteinID:CBI18888	ProteinID:CBI18888.3
InterPro:CTU1_C	UniProt:E0CQT4	EMBL:FN595227	GO:GO:0000049	GO:GO:0002098	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0006464	GO:GO:0008033	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016740	GO:GO:0016779	GO:GO:0019538	GO:GO:0032447
GO:GO:0034227	InterPro:IPR014729	EntrezGene:LOC100242135	wikigene:LOC100242135	HAMAP:MF_03053	InterPro:Ncs6/Tuc1/Ctu1
PFAM:PF01171	PFAM:PF16503	PIRSF:PIRSF004976	PANTHER:PTHR11807	PANTHER:PTHR11807:SF12	InterPro:Rossmann-like_a/b/a_fold
SUPFAM:SSF52402	TIGR:TC62575	InterPro:TilS/TtcA_N	UniParc:UPI0001BE17A1	ArrayExpress:VIT_18s0001g00440	EnsemblPlantsGene:VIT_18s0001g00440
EnsemblPlants:VIT_18s0001g00440.t01	RefSeq:XP_002285915	RefSeq:XP_002285915.1	RefSeq:XP_003634474	RefSeq:XP_003634474.1	InterPro:tRNA_thiolation_TtcA_Ctu1

Description

Cytoplasmic tRNA 2-thiolation protein 1 [Source:UniProtKB/TrEMBL;Acc:E0CQT4]

Coordinates

chr18:+:1330117..1337522

Molecular Weight (calculated)

41969.8 Da

IEP (calculated)

8.919

GRAVY (calculated)

-0.340

Length

370 amino acids

Sequence
(BLAST)

001: MGEAEVKPKK AGPVQCSICS QRRAALKRPK TLEQICRECF YAVFEEEIHR VVVDNQLFKP GERIAIGASG GKDSTVLAYV LSELNRRHNY GLDLFLLSVD
101: EGITGYRDDS LETVKRNEIQ YGLPLKVVSY KDLYGWTMDE IVKMIGLKNN CTFCGVFRRQ ALDRGAAMLK VDKLATGHNA DDIAETVLLN ILRGDIARLS
201: RCTSIITGED GPIPRCKPFK YTYEKEIVIY PYSFLQNLNR IYTYAYFKRL DYFSTECIYS PNAYRGFARE FIKDLERIRP RAILDIIRSG EKFRISTSAK
301: MPEQGTCERC GYISSQKWCK ACVLLEGLNR GLPKLGIGRT RGLNNGLECD TKQSNGVKNI QSKQCGTLDF

Best Arabidopsis Sequence Match ( AT2G44270.1 )
(BLAST)

001: MEAKNKKAVA SRLCCLCNLR RPVLKRPKTL QQICRECFYE VFEEEIHQVI VQNRLFKSGE RVAIGASGGK DSTVLAYVLS ELNRRHNYGL DLFLLSIDEG
101: ITGYRDDSLE TVKRNEVQYG LPLKIVSYKD LYGWTMDEIV KMIGLKNNCT FCGVFRRQAL DRGAALLKVE KLVTGHNADD IAETVLLNIL RGDIARLSRC
201: TSITTGEDGP IPRCKPFKYT YEKEIVMYAY FKKLDYFSTE CIYSPNAYRG FAREFIKDLE RIRPRAILDI IKSGEDFRIA TTTKMPEQGT CERCGYISSQ
301: KWCKACVLLE GLNRGLPKMG IGRPRGVNGD HNKETKKPGS VAKSIESKQC GSLDF

Arabidopsis Description

NCS6Cytoplasmic tRNA 2-thiolation protein 1 [Source:UniProtKB/TrEMBL;Acc:A0A178VUZ0]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.