Factsheet for Bra015780.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 2
cytosol 3
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX87632	Canola	cytosol	83.06	96.87
Bra004822.1-P	Field mustard	cytosol	90.05	83.96
Os01t0598900-00	Rice	cytosol	72.85	83.38
TraesCS5A01G214500.1	Wheat	mitochondrion	78.49	81.11
TraesCS5D01G217500.1	Wheat	mitochondrion	78.49	81.11
AT1G76170.7	Thale cress	cytosol	79.57	81.1
TraesCS5B01G209300.1	Wheat	mitochondrion	78.23	80.83
Os02t0762300-01	Rice	cytosol	77.42	79.34
KRH60667	Soybean	cytosol	75.27	79.32
VIT_18s0001g00440.t01	Wine grape	cytosol	78.76	79.19
EES07570	Sorghum	cytosol	75.81	77.47
Solyc08g074580.2.1	Tomato	mitochondrion	24.46	71.09
HORVU5Hr1G061960.1	Barley	cytosol	78.23	69.95
HORVU6Hr1G078790.1	Barley	cytosol	17.2	69.57
GSMUA_Achr7P03970_001	Banana	cytosol, mitochondrion, plastid	25.0	68.89
Zm00001d018148_P003	Maize	cytosol	72.85	66.91

Protein Annotations

MapMan:16.6.5.1.4.1	Gene3D:3.40.50.620	EnsemblPlantsGene:Bra015780	EnsemblPlants:Bra015780.1	EnsemblPlants:Bra015780.1-P	InterPro:CTU1_C
GO:GO:0000049	GO:GO:0002098	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139
GO:GO:0006464	GO:GO:0008033	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016740
GO:GO:0016779	GO:GO:0019538	GO:GO:0032447	GO:GO:0034227	InterPro:IPR014729	UniProt:M4DH03
HAMAP:MF_03053	InterPro:Ncs6/Tuc1/Ctu1	PFAM:PF01171	PFAM:PF16503	PIRSF:PIRSF004976	PANTHER:PTHR11807
PANTHER:PTHR11807:SF12	InterPro:Rossmann-like_a/b/a_fold	SUPFAM:SSF52402	InterPro:TilS/TtcA_N	UniParc:UPI0002542058	SEG:seg
InterPro:tRNA_thiolation_TtcA_Ctu1	:	:	:	:	:

Description

AT2G44270 (E=4e-120) | ATP binding

Coordinates

chrA07:-:20889236..20891075

Molecular Weight (calculated)

41749.4 Da

IEP (calculated)

8.740

GRAVY (calculated)

-0.378

Length

372 amino acids

Sequence
(BLAST)

001: MERGEAKSKK AGGPPRLCCI CNEKRPVLKR PKTLQQICRE CFYEVFEEEI HQAIVNNGLF KSGERVAIGA SGGKDSTVLA YVLSELNRRH SYGLDLFLLS
101: IDEGITGYRD DSLETVKRNE LQYGLPLQIL SYKDLYGWTM DDIVKMIGLK NNCTFCGVFR RQALDRGAAL LKVDKLVTGH NADDIAETVL LNILRGDIAR
201: LSRCTSITTG EDGPIPRCKP FKYTYEKEIV IYPFAVSNPH HTYAYFKKLD YFSTECIYSP NAYRGFAREF IKDLERLRPR AILDIIKSGE DFRIATTTKM
301: PEQGTCERCG YISSQKWCKA CVLLDGLNRG LPKMGIGRAR GGGVNGGDHK KETKAGSTVK TLETKQCGSL DF

Best Arabidopsis Sequence Match ( AT2G44270.1 )
(BLAST)

001: MEAKNKKAVA SRLCCLCNLR RPVLKRPKTL QQICRECFYE VFEEEIHQVI VQNRLFKSGE RVAIGASGGK DSTVLAYVLS ELNRRHNYGL DLFLLSIDEG
101: ITGYRDDSLE TVKRNEVQYG LPLKIVSYKD LYGWTMDEIV KMIGLKNNCT FCGVFRRQAL DRGAALLKVE KLVTGHNADD IAETVLLNIL RGDIARLSRC
201: TSITTGEDGP IPRCKPFKYT YEKEIVMYAY FKKLDYFSTE CIYSPNAYRG FAREFIKDLE RIRPRAILDI IKSGEDFRIA TTTKMPEQGT CERCGYISSQ
301: KWCKACVLLE GLNRGLPKMG IGRPRGVNGD HNKETKKPGS VAKSIESKQC GSLDF

Arabidopsis Description

NCS6Cytoplasmic tRNA 2-thiolation protein 1 [Source:UniProtKB/TrEMBL;Acc:A0A178VUZ0]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.