Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 2
- cytosol 3
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os01t0598900-00 | Rice | cytosol | 86.5 | 96.62 |
| TraesCS5D01G217500.1 | Wheat | mitochondrion | 91.74 | 92.5 |
| TraesCS5B01G209300.1 | Wheat | mitochondrion | 91.74 | 92.5 |
| TraesCS5A01G214500.1 | Wheat | mitochondrion | 91.74 | 92.5 |
| EES07570 | Sorghum | cytosol | 89.53 | 89.29 |
| Solyc08g074590.2.1 | Tomato | cytosol | 53.99 | 85.59 |
| GSMUA_Achr7P03980_001 | Banana | cytosol | 55.65 | 83.13 |
| CDX87632 | Canola | cytosol | 73.0 | 83.07 |
| AT2G44270.1 | Thale cress | mitochondrion | 79.61 | 81.41 |
| KRH60667 | Soybean | cytosol | 79.06 | 81.3 |
| HORVU5Hr1G061960.1 | Barley | cytosol | 91.46 | 79.81 |
| Zm00001d018148_P003 | Maize | cytosol | 87.6 | 78.52 |
| CDX73239 | Canola | cytosol | 77.14 | 78.21 |
| CDY64359 | Canola | cytosol | 74.38 | 77.81 |
| CDY17861 | Canola | cytosol | 74.1 | 77.52 |
| Bra015780.1-P | Field mustard | cytosol | 79.34 | 77.42 |
| VIT_18s0001g00440.t01 | Wine grape | cytosol | 78.79 | 77.3 |
| AT1G76170.7 | Thale cress | cytosol | 73.83 | 73.42 |
| HORVU6Hr1G078790.1 | Barley | cytosol | 18.46 | 72.83 |
| Bra004822.1-P | Field mustard | cytosol | 79.34 | 72.18 |
| Solyc08g074580.2.1 | Tomato | mitochondrion | 23.97 | 67.97 |
Protein Annotations
| MapMan:16.6.5.1.4.1 | Gene3D:3.40.50.620 | EntrezGene:4330815 | EMBL:AK106684 | ProteinID:BAD17212.1 | ProteinID:BAF10117.1 |
| ProteinID:BAS81043.1 | InterPro:CTU1_C | GO:GO:0000049 | GO:GO:0002098 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005737 | GO:GO:0006139 | GO:GO:0006259 | GO:GO:0006464 | GO:GO:0006950 |
| GO:GO:0006974 | GO:GO:0007049 | GO:GO:0008033 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0016740 | GO:GO:0016779 | GO:GO:0019538 | GO:GO:0032447 | GO:GO:0034227 |
| GO:GO:0048478 | InterPro:IPR014729 | HAMAP:MF_03053 | InterPro:Ncs6/Tuc1/Ctu1 | EnsemblPlantsGene:Os02g0762300 | EnsemblPlants:Os02t0762300-01 |
| PFAM:PF01171 | PFAM:PF16503 | PIRSF:PIRSF004976 | PANTHER:PTHR11807 | PANTHER:PTHR11807:SF12 | UniProt:Q6Z6G6 |
| InterPro:Rossmann-like_a/b/a_fold | SUPFAM:SSF52402 | TIGRFAMs:TIGR00269 | InterPro:TilS/TtcA_N | UniParc:UPI000035AE4D | RefSeq:XP_015623486.1 |
| RefSeq:XP_015623487.1 | InterPro:tRNA_thiolation_TtcA_Ctu1 | : | : | : | : |
Description
NCS62-thiocytidine tRNA biosynthesis protein, TtcA domain containing protein. (Os02t0762300-01)
Coordinates
chr2:-:32099098..32102893
Molecular Weight (calculated)
40875.2 Da
IEP (calculated)
8.652
GRAVY (calculated)
-0.398
Length
363 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSAVDGPRQ PPARAGSRLC TRCGERKAAL KRPKTLEQIC RECFYVVFED EIHQTIVDNN LFKPGDRVAI GASGGKDSTV LAYVLSELNR RHKYCLDLFL
101: LSVDEGITGY RDDSLETVKR NEIQYGLPLK IVSYKDLYGW TMDDIVKAIG LKNNCTFCGV FRRQALDRGA ALLKVDKIVT GHNADDIAET VLLNILRGDI
201: ARLSRCTFIT TGEDGPIPRC KPFKYTYEKE IVMYAYFKKL DYFSTECIYS PNAYRGFARE FIKDLERMRP RAILDIIKSG ENFRISTTTR MPEQGTCERC
301: GYISSQKLCK ACVLLDGLNR GLPKLGIGRT KGIAGGDGDC EQQATRSERN RSSLQGKHGN FDF
101: LSVDEGITGY RDDSLETVKR NEIQYGLPLK IVSYKDLYGW TMDDIVKAIG LKNNCTFCGV FRRQALDRGA ALLKVDKIVT GHNADDIAET VLLNILRGDI
201: ARLSRCTFIT TGEDGPIPRC KPFKYTYEKE IVMYAYFKKL DYFSTECIYS PNAYRGFARE FIKDLERMRP RAILDIIKSG ENFRISTTTR MPEQGTCERC
301: GYISSQKLCK ACVLLDGLNR GLPKLGIGRT KGIAGGDGDC EQQATRSERN RSSLQGKHGN FDF
001: MEAKNKKAVA SRLCCLCNLR RPVLKRPKTL QQICRECFYE VFEEEIHQVI VQNRLFKSGE RVAIGASGGK DSTVLAYVLS ELNRRHNYGL DLFLLSIDEG
101: ITGYRDDSLE TVKRNEVQYG LPLKIVSYKD LYGWTMDEIV KMIGLKNNCT FCGVFRRQAL DRGAALLKVE KLVTGHNADD IAETVLLNIL RGDIARLSRC
201: TSITTGEDGP IPRCKPFKYT YEKEIVMYAY FKKLDYFSTE CIYSPNAYRG FAREFIKDLE RIRPRAILDI IKSGEDFRIA TTTKMPEQGT CERCGYISSQ
301: KWCKACVLLE GLNRGLPKMG IGRPRGVNGD HNKETKKPGS VAKSIESKQC GSLDF
101: ITGYRDDSLE TVKRNEVQYG LPLKIVSYKD LYGWTMDEIV KMIGLKNNCT FCGVFRRQAL DRGAALLKVE KLVTGHNADD IAETVLLNIL RGDIARLSRC
201: TSITTGEDGP IPRCKPFKYT YEKEIVMYAY FKKLDYFSTE CIYSPNAYRG FAREFIKDLE RIRPRAILDI IKSGEDFRIA TTTKMPEQGT CERCGYISSQ
301: KWCKACVLLE GLNRGLPKMG IGRPRGVNGD HNKETKKPGS VAKSIESKQC GSLDF
Arabidopsis Description
NCS6Cytoplasmic tRNA 2-thiolation protein 1 [Source:UniProtKB/TrEMBL;Acc:A0A178VUZ0]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.