CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX87632	Canola	cytosol	82.12	92.16
CDY64359	Canola	cytosol	84.92	87.61
CDY17861	Canola	cytosol	84.64	87.32
Os01t0598900-00	Rice	cytosol	73.46	80.92
AT1G76170.7	Thale cress	cytosol	80.45	78.9
TraesCS5D01G217500.1	Wheat	mitochondrion	79.05	78.61
TraesCS5A01G214500.1	Wheat	mitochondrion	79.05	78.61
TraesCS5B01G209300.1	Wheat	mitochondrion	78.77	78.33
KRH60667	Soybean	cytosol	76.82	77.9
Os02t0762300-01	Rice	cytosol	78.21	77.14
VIT_18s0001g00440.t01	Wine grape	cytosol	79.61	77.03
EES07570	Sorghum	cytosol	76.54	75.27
Solyc08g074580.2.1	Tomato	mitochondrion	25.7	71.88
GSMUA_Achr7P03970_001	Banana	cytosol, mitochondrion, plastid	26.26	69.63
HORVU6Hr1G078790.1	Barley	cytosol	17.88	69.57
HORVU5Hr1G061960.1	Barley	cytosol	78.77	67.79
Zm00001d018148_P003	Maize	cytosol	73.74	65.19

Protein Annotations

MapMan:16.6.5.1.4.1	Gene3D:3.40.50.620	GO:A0A078CAL1	EnsemblPlants:CDX73239	ProteinID:CDX73239	ProteinID:CDX73239.1
InterPro:CTU1_C	GO:GO:0000049	GO:GO:0002098	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	GO:GO:0006139	GO:GO:0006464	GO:GO:0008033	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0019538	GO:GO:0032447	GO:GO:0034227	EnsemblPlantsGene:GSBRNA2T00103741001	InterPro:IPR014729
HAMAP:MF_03053	InterPro:Ncs6/Tuc1/Ctu1	PFAM:PF01171	PFAM:PF16503	PIRSF:PIRSF004976	PANTHER:PTHR11807
PANTHER:PTHR11807:SF12	InterPro:Rossmann-like_a/b/a_fold	SUPFAM:SSF52402	InterPro:TilS/TtcA_N	UniPathway:UPA00988	UniParc:UPI0004EDCBC6
SEG:seg	InterPro:tRNA_thiolation_TtcA_Ctu1	:	:	:	:

Description

BnaC06g36870D

Coordinates

chrLK031797:-:2826260..2828422

Molecular Weight (calculated)

40443.0 Da

IEP (calculated)

8.598

GRAVY (calculated)

-0.366

Length

358 amino acids

Sequence
(BLAST)

001: MEKGEAKSKK PARLCCICNE RRPVLKRPKT LQQICRECFY EEEIHQAIVK NRLFKSGERV AIGASGGKDS TVLAYVLSEL NRRHSYGLDL FLLSIDEGIT
101: GYRDDSLETV KRNELQYGLP LQILSYKDLY GWTMDDIVKM IGLKNNCTFC GVFRRQALDR GAALLKVDKL VTGHNADDIA ETVLLNILIS LGILSRCTSI
201: TTGEDGPIPR CKPFKYTYEK EIDFNNLEVC HTYAYFKKLD YFSTECIYSP NAYRGFAREF IKDLERLRPR AILDIIKSGE DFRIATTTKM PEQGTCERCG
301: YISSQKWCKA CVLLDGLNRG LPKMGIGRAR GGGVNGGDHK KETTVKTLES KQCGSLDF

Best Arabidopsis Sequence Match ( AT2G44270.1 )
(BLAST)

001: MEAKNKKAVA SRLCCLCNLR RPVLKRPKTL QQICRECFYE VFEEEIHQVI VQNRLFKSGE RVAIGASGGK DSTVLAYVLS ELNRRHNYGL DLFLLSIDEG
101: ITGYRDDSLE TVKRNEVQYG LPLKIVSYKD LYGWTMDEIV KMIGLKNNCT FCGVFRRQAL DRGAALLKVE KLVTGHNADD IAETVLLNIL RGDIARLSRC
201: TSITTGEDGP IPRCKPFKYT YEKEIVMYAY FKKLDYFSTE CIYSPNAYRG FAREFIKDLE RIRPRAILDI IKSGEDFRIA TTTKMPEQGT CERCGYISSQ
301: KWCKACVLLE GLNRGLPKMG IGRPRGVNGD HNKETKKPGS VAKSIESKQC GSLDF

Arabidopsis Description

NCS6Cytoplasmic tRNA 2-thiolation protein 1 [Source:UniProtKB/TrEMBL;Acc:A0A178VUZ0]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.